RefMet Compound Details

RefMet ID, RefMet name, exact mass and formula
RefMet IDRM0044847
RefMet nameGlcCer 21:0;O3/35:0
Alternative nameGlcCer(t21:0/35:0)
Systematic nameN-(pentatriacontanoyl)-1-beta-glucosyl-4R-hydroxyheneicosasphinganine
SynonymsPubChem Synonyms
Sum CompositionGlcCer 56:0;O3 View other entries in RefMet with this sum composition
Exact mass1025.919784 (neutral)
Calculate m/z:   
View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
FormulaC62H123NO9View other entries in RefMet with this formula
Molecular descriptors
Molfile90058 (Download molfile/View MW Metabolite Database details)
InChIInChI=1S/C62H123NO9/c1-3-5-7-9-11-13-15-17-19-20-21-22-23-24-25-26-27-28-29-30-31-32-33-34-35-37-39-41-43-45-47-49-51-57(66)63-54(
53-71-62-61(70)60(69)59(68)56(52-64)72-62)58(67)55(65)50-48-46-44-42-40-38-36-18-16-14-12-10-8-6-4-2/h54-56,58-62,64-65,67-70H,3-5
3H2,1-2H3,(H,63,66)/t54-,55+,56+,58-,59+,60-,61+,62+/m0/s1
InChIKeyWBLKSPJDIUYCEN-JEWXNCMSSA-NView other enantiomers/diastereomers of this metabolite in RefMet
SMILESCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO[C@H]1C(C([C@@H]([C@@H](CO)O1)O)O)O)[C@@H]([C@@H](CCCCCCCCCCCCCCCCC)O)O
Run Tanimoto similarity search (with similarity coefficient >=0.6)
Chemical/Biochemical Classification
Super ClassSphingolipids
Main ClassGlycosphingolipids
Sub ClassHexCer (Hexosyl ceramides)
Distribution of GlcCer 21:0;O3/35:0 in NMDR studies
SpeciesPlot Species distribution
Sample sourcePlot Sample source(tissue) distribution
PlatformPlatform (MS/NMR) used for detection
ChromatographyChromatography methods used for detection
StudiesNMDR Studies reporting GlcCer 21:0;O3/35:0
External Links
Pubchem CID145717003
LIPID MAPSLMSP05019CWO
KEGG IDC01190
Structural annotation level
Annotation level1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)

Table of KEGG reactions in human pathways involving GlcCer 21:0;O3/35:0

Rxn IDKEGG ReactionEnzyme
R01497 UDP-glucose + N-Acylsphingosine <=> UDP + GlucosylceramideUDP-glucose:N-acylsphingosine D-glucosyltransferase
R01498 Glucosylceramide + H2O <=> D-Glucose + N-AcylsphingosineD-Glucosyl-N-acylsphingosine glucohydrolase
R03354 Glucosylceramide + UDP-alpha-D-galactose <=> Lactosylceramide + UDPUDP-alpha-D-galactose:beta-D-glucosyl-(1<->1)-ceramide 4-beta-D-galactosyltransferase
R03355 Lactosylceramide + H2O <=> Glucosylceramide + D-Galactosebeta-D-Galactosyl-1,4-beta-D-glucosylceramide galactohydrolase

Table of KEGG human pathways containing GlcCer 21:0;O3/35:0

Pathway IDHuman Pathway# of reactions
hsa00600 Sphingolipid metabolism 4
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