RefMet Compound Details

RefMet ID, RefMet name, exact mass and formula
RefMet ID	RM0110472
RefMet name	sn-Glycero-3-phosphocholine
Systematic name	(2R)-2,3-dihydroxypropyl 2-(trimethylammonio)ethyl phosphate
Synonyms	PubChem Synonyms
Exact mass	257.102827 (neutral)	Calculate m/z: (Choose adduct) [M+H]+ [M+H-H2O]+ [M.]+ [M+2H]2+ [M+3H]3+ [M+4H]4+ [M+K]+ [M+2K]2+ [M+2K-H]+ [M+Na]+ [M+2Na]2+ [M+2Na-H]+ [M+Li]+ [M+2Li]2+ [M+NH4]+ [M.CH3]+ [M+Ag]+ [M+H+CH3OH]+ [M+H+CH3CN]+ [M+H+2CH3CN]+ [M+Na+CH3CN]+ [M.NaFormate+H]+ [M.NH4Formate+H]+ [M.TMSi]+ [M.tBuDMSi]+ [M+H-Hexose]+ [M+H-EtnP]+ [M+H-SerP]+ [M-H]- [M-H-H2O]- [M-CH3]- [M-2H]2- [M-3H]3- [M-4H]4- [M+Cl]- [M+OAc]- [M+Na-2H]- [M+K-2H]- [M.Formate]- [M.NaFormate-H]- [M.NH4Formate-H]- [M.F]- [M-H-Ser]- [M.HF2]- M(neutral)    View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
Formula	C8H20NO6P	View other entries in RefMet with this formula
Molecular descriptors
Molfile	58812 (Download molfile/View MW Metabolite Database details)
InChI	InChI=1S/C8H20NO6P/c1-9(2,3)4-5-14-16(12,13)15-7-8(11)6-10/h8,10-11H,4-7H2,1-3H3/t8-/m1/s1
InChIKey	SUHOQUVVVLNYQR-MRVPVSSYSA-N	View other enantiomers/diastereomers of this metabolite in RefMet
SMILES	C[N+](C)(C)CCOP(=O)([O-])OC[C@@H](CO)O Run Tanimoto similarity search (with similarity coefficient >=0.6)
Chemical/Biochemical Classification
Super Class	Organic acids
Main Class	Organic phosphoric acids
Sub Class	Organic phosphoric acids
Distribution of sn-Glycero-3-phosphocholine in NMDR studies
Species	Plot Species distribution
Sample source	Plot Sample source(tissue) distribution
Platform	Platform (MS/NMR) used for detection
Chromatography	Chromatography methods used for detection
Studies	NMDR Studies reporting sn-Glycero-3-phosphocholine
External Links
Pubchem CID	657272
ChEBI ID	16870
KEGG ID	C00670
HMDB ID	HMDB0000086
MetaCyc ID	L-1-GLYCERO-PHOSPHORYLCHOLINE
Spectral data for sn-Glycero-3-phosphocholine standards
NP-MRD ID(NMR)	View NMR spectra
MassBank(EU)	View MS spectra
Structural annotation level
Annotation level	1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)

Table of KEGG reactions in human pathways involving sn-Glycero-3-phosphocholine

Rxn ID	KEGG Reaction	Enzyme
R01030	sn-Glycero-3-phosphocholine + H2O <=> Choline + sn-Glycerol 3-phosphate	sn-Glycero-3-phosphocholine glycerophosphohydrolase
R02745	1-(1-Alkenyl)-sn-glycero-3-phosphocholine + H2O <=> Aldehyde + sn-Glycero-3-phosphocholine	1-(1-alkenyl)-sn-glycero-3-phosphocholine aldehydohydrolase
R02746	1-Acyl-sn-glycero-3-phosphocholine + H2O <=> sn-Glycero-3-phosphocholine + Fatty acid	1-Acyl-sn-glycero-3-phosphocholine acylhydrolase
R02747	2-Acyl-sn-glycero-3-phosphocholine + H2O <=> sn-Glycero-3-phosphocholine + Fatty acid	2-Acyl-sn-glycero-3-phosphocholine acylhydrolase

Table of KEGG human pathways containing sn-Glycero-3-phosphocholine

Pathway ID	Human Pathway	# of reactions
hsa00564	Glycerophospholipid metabolism	3
hsa00565	Ether lipid metabolism	1