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MB Sample ID: SA167134
| Local Sample ID: | Sa_14 |
| Subject ID: | SU001871 |
| Subject Type: | Human |
| Subject Species: | Homo sapiens |
| Taxonomy ID: | 9606 |
Select appropriate tab below to view additional metadata details:
Subject:
| Subject ID: | SU001871 |
| Subject Type: | Human |
| Subject Species: | Homo sapiens |
| Taxonomy ID: | 9606 |
Factors:
| Local Sample ID | MB Sample ID | Factor Level ID | Level Value | Factor Name |
|---|---|---|---|---|
| Sa_14 | SA167134 | FL019881 | Time point 14 | Factor |
Collection:
| Collection ID: | CO001864 |
| Collection Summary: | Samples were retrieved from the lumen of the jejunum of a human subject over 8 hours collected at approximately 30 minute intervals. |
| Sample Type: | Jejunum |
Treatment:
| Treatment ID: | TR001884 |
| Treatment Summary: | Diet and acetaminophen consumption were recorded throughout the collection period. |
Sample Preparation:
| Sampleprep ID: | SP001877 |
| Sampleprep Summary: | 20 uL of jejunum supernatant was extracted using a biphasic liquid liquid extraction for HILIC and CSH LC-MS/MS analysis as in doi: 10.3390/metabo9050101 |
Combined analysis:
| Analysis ID | AN002911 | AN002912 | AN002913 | AN002914 |
|---|---|---|---|---|
| Analysis type | MS | MS | MS | MS |
| Chromatography type | HILIC | HILIC | Reversed phase | Reversed phase |
| Chromatography system | Thermo Vanquish | Thermo Vanquish | Thermo Vanquish | Thermo Vanquish |
| Column | Waters Acquity BEH Amide (150 x 2.1mm,1.7um) | Waters Acquity BEH Amide (150 x 2.1mm,1.7um) | Waters Acquity CSH C18 (100 x 2.1mm,1.7um) | Waters Acquity CSH C18 (100 x 2.1mm,1.7um) |
| MS Type | ESI | ESI | ESI | ESI |
| MS instrument type | Orbitrap | Orbitrap | Orbitrap | Orbitrap |
| MS instrument name | Thermo Q Exactive Plus Orbitrap | Thermo Q Exactive Plus Orbitrap | Thermo Q Exactive Plus Orbitrap | Thermo Q Exactive Plus Orbitrap |
| Ion Mode | POSITIVE | NEGATIVE | POSITIVE | NEGATIVE |
| Units | Peak Height Intensity | Peak Height Intensity | Peak Height Intensity | Peak Height Intensity |
Chromatography:
| Chromatography ID: | CH002157 |
| Chromatography Summary: | HILIC |
| Instrument Name: | Thermo Vanquish |
| Column Name: | Waters Acquity BEH Amide (150 x 2.1mm,1.7um) |
| Column Temperature: | 45 |
| Flow Gradient: | The gradient started at 100% B, was held at 100% B from 0-2 minutes, decreased to 70% B between 2-7.7 minutes, decreased to 40% between 7.7 and 9.5 minutes, was held at 40% B from 9.5-12.75 minutes, returned to 100% B between 12.75-12.85 minutes, and was held at 100% B from 12.85-17 minutes. |
| Flow Rate: | 0.4 ml/min |
| Sample Injection: | 3 uL |
| Solvent A: | 100% water; 0.1% formic acid; 10 mM ammonium formate |
| Solvent B: | 95% acetonitrile/5% water; 0.1% formic acid; 10 mM ammonium formate |
| Chromatography Type: | HILIC |
| Chromatography ID: | CH002158 |
| Chromatography Summary: | CSH |
| Instrument Name: | Thermo Vanquish |
| Column Name: | Waters Acquity CSH C18 (100 x 2.1mm,1.7um) |
| Column Temperature: | 65 |
| Flow Gradient: | The LC gradient started at 15% B, increased to 30% B from 0-2 minutes, increased to 48% B from 2-2.5 minutes, increased to 82% B from 2.5-11 minutes, increased to 99% B from 11-11.5 minutes, held at 99% B from 11.5-12 minutes, returned to 15% B from 12-12.1 minutes and held at 15% B from 12.1-15 minutes. |
| Flow Rate: | 0.6 ml/min |
| Sample Injection: | 4 uL |
| Solvent A: | 40% water/60% acetonitrile; 0.1% formic acid; 10 mM ammonium formate(+ mode); 40% water/60% acetonitrile; 10 mM ammonium acetate(- mode) |
| Solvent B: | 90% isopropanol/10% acetonitrile; 0.1% formic acid; 10mM ammonium formate for positive mode ionization, and 10mM ammonium acetate for negative mode ionization. |
| Chromatography Type: | Reversed phase |
MS:
| MS ID: | MS002703 |
| Analysis ID: | AN002911 |
| Instrument Name: | Thermo Q Exactive Plus Orbitrap |
| Instrument Type: | Orbitrap |
| MS Type: | ESI |
| MS Comments: | LC-MS/MS data was processed using open source software MS-DIAL (version 4.24) which performed peak picking, deisotoping, automated peak annotation, alignment and gap filling. |
| Ion Mode: | POSITIVE |
| MS ID: | MS002704 |
| Analysis ID: | AN002912 |
| Instrument Name: | Thermo Q Exactive Plus Orbitrap |
| Instrument Type: | Orbitrap |
| MS Type: | ESI |
| MS Comments: | LC-MS/MS data was processed using open source software MS-DIAL (version 4.24) which performed peak picking, deisotoping, automated peak annotation, alignment and gap filling. |
| Ion Mode: | NEGATIVE |
| MS ID: | MS002705 |
| Analysis ID: | AN002913 |
| Instrument Name: | Thermo Q Exactive Plus Orbitrap |
| Instrument Type: | Orbitrap |
| MS Type: | ESI |
| MS Comments: | LC-MS/MS data was processed using open source software MS-DIAL (version 4.24) which performed peak picking, deisotoping, automated peak annotation, alignment and gap filling. |
| Ion Mode: | POSITIVE |
| MS ID: | MS002706 |
| Analysis ID: | AN002914 |
| Instrument Name: | Thermo Q Exactive Plus Orbitrap |
| Instrument Type: | Orbitrap |
| MS Type: | ESI |
| MS Comments: | LC-MS/MS data was processed using open source software MS-DIAL (version 4.24) which performed peak picking, deisotoping, automated peak annotation, alignment and gap filling. |
| Ion Mode: | NEGATIVE |
