Summary of study ST001111

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000742. The data can be accessed directly via it's Project DOI: 10.21228/M8RX01 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

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Study IDST001111
Study TitleBreast Cancer Lipidomics Tissue
Study SummaryScreening of Breast Cancer tissue samples for alteration in the lipidome using high resolution mass spectrometer,and mapping of these changes to clinico-pathological data to search for potential bio markers
Institute
BCM
Last NameSreekumar
First NameArun
Address1 Baylor Plaza
EmailArun.Sreekumar@bcm.edu
Phone7137983139
Submit Date2017-12-06
Release Date2019-01-22
Release Version1
Arun Sreekumar Arun Sreekumar
https://dx.doi.org/10.21228/M8RX01
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:


Project:

Project ID:PR000742
Project DOI:doi: 10.21228/M8RX01
Project Title:Breast Cancer Lipidomics Tissue data
Project Summary:Screening of Breast Cancer tissue samples for alteration in the lipidome using high resolution mass spectrometer,and mapping of these changes to clinico-pathological data to search for potential bio markers
Institute:Baylor College of Medicine
Last Name:Sreekumar
First Name:Arun
Address:1 Baylor Plaza
Email:Arun.Sreekumar@bcm.edu
Phone:7137983144

Subject:

Subject ID:SU001156
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Sample
SA07574335Benign
SA07574465Benign
SA075745102Benign
SA07574681Benign
SA07574762Benign
SA075748104Benign
SA07574966Benign
SA07575087Benign
SA07575129Benign
SA07575267Benign
SA07575331Benign
SA07575483Benign
SA07575595Benign
SA07575650Benign
SA07575749Benign
SA07575851Benign
SA07575952Benign
SA07576091Benign
SA07576148Benign
SA07576247Benign
SA07576327Benign
SA07576494Benign
SA07576593Benign
SA07576645Benign
SA07576796Benign
SA07576828Benign
SA07576911Benign
SA075770114Benign
SA07577179Benign
SA07577270Benign
SA075773107Benign
SA07577478Benign
SA07577577Benign
SA0757763Benign
SA075777118Benign
SA0757785Benign
SA0757796Benign
SA07578015Benign
SA07578114Benign
SA07578268Benign
SA07578316Benign
SA075784109Benign
SA075785108Benign
SA07578625Benign
SA07578720Benign
SA07578821Benign
SA07578917Benign
SA07579018Benign
SA07579185Cancer
SA07579286Cancer
SA07579382Cancer
SA07579476Cancer
SA07579584Cancer
SA07579680Cancer
SA075797101Cancer
SA075798111Cancer
SA075799110Cancer
SA075800106Cancer
SA075801112Cancer
SA075802113Cancer
SA075803117Cancer
SA075804116Cancer
SA075805115Cancer
SA075806105Cancer
SA075807103Cancer
SA07580892Cancer
SA07580990Cancer
SA07581089Cancer
SA07581198Cancer
SA07581299Cancer
SA07581375Cancer
SA075814100Cancer
SA07581588Cancer
SA07581660Cancer
SA07581734Cancer
SA07581833Cancer
SA07581932Cancer
SA07582030Cancer
SA07582136Cancer
SA07582237Cancer
SA07582340Cancer
SA07582439Cancer
SA07582538Cancer
SA07582626Cancer
SA07582724Cancer
SA07582810Cancer
SA0758299Cancer
SA0758308Cancer
SA07583112Cancer
SA07583213Cancer
SA07583323Cancer
SA07583422Cancer
SA07583519Cancer
SA07583674Cancer
SA07583741Cancer
SA07583863Cancer
SA07583961Cancer
SA0758401Cancer
SA07584159Cancer
SA07584264Cancer
SA07584369Cancer
SA07584473Cancer
SA07584572Cancer
SA07584671Cancer
SA07584758Cancer
SA07584857Cancer
SA07584944Cancer
SA07585043Cancer
SA07585142Cancer
SA07585246Cancer
SA07585353Cancer
SA07585456Cancer
SA0758552Cancer
SA07585654Cancer
SA0758574Metastasis
SA07585897Metastasis
SA07585955Metastasis
SA0758607Metastasis

Collection:

Collection ID:CO001150
Collection Summary:Tissue samples (breast epithelial and adjacent benign adipose tissue) collected by Roswell Park Cancer Institute and lipidomic screening performed at BCM
Sample Type:Human breast epithelial and adipose tissue

Treatment:

Treatment ID:TR001170
Treatment Summary:Breast cancer epithelial tissue and breast cancer adipose tissue

Sample Preparation:

Sampleprep ID:SP001163
Sampleprep Summary:Refer to Badrajee et al, 2017 for sample prep details

Combined analysis:

Analysis ID AN001805 AN001806
Analysis type MS MS
Chromatography type Reversed phase Reversed phase
Chromatography system AB Sciex Triple TOF 5600 AB Sciex Triple TOF 5600
Column Acquity HSS UPLC T3 column Acquity HSS UPLC T3 column
MS Type ESI ESI
MS instrument type Triple TOF Triple TOF
MS instrument name ABI Sciex 5600 TripleTOF ABI Sciex 5600 TripleTOF
Ion Mode POSITIVE NEGATIVE
Units signal intensity normalized signal intensity normalized

Chromatography:

Chromatography ID:CH001272
Instrument Name:AB Sciex Triple TOF 5600
Column Name:Acquity HSS UPLC T3 column
Chromatography Type:Reversed phase

MS:

MS ID:MS001663
Analysis ID:AN001805
Instrument Name:ABI Sciex 5600 TripleTOF
Instrument Type:Triple TOF
MS Type:ESI
MS Comments:signal intensity normalized by overall median
Ion Mode:POSITIVE
  
MS ID:MS001664
Analysis ID:AN001806
Instrument Name:ABI Sciex 5600 TripleTOF
Instrument Type:Triple TOF
MS Type:ESI
MS Comments:signal intensity normalized by overall median
Ion Mode:NEGATIVE