Summary of Study ST000117
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000106. The data can be accessed directly via it's Project DOI: 10.21228/M8RC75 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
Study ID | ST000117 |
Study Title | Metabolomics analysis of multiple metabolic functions in the YjgF/YER057c/UK114 (Rid) protein family GC-MS (Part 1) |
Study Type | wildtype vs knock-out |
Study Summary | Metabolomics analysis of wild-type S. enterica, single RidA knock-out and triple Rid (ridA Rid2 Rid7) knock-out S.enterica cells |
Institute | University of California, Davis |
Department | Genome Center |
Laboratory | Fiehn Laboratory |
Last Name | ElBadawi-Sidhu |
First Name | Mona |
Address | 451 Health Sciences Drive, Davis, California 95616, USA |
mmelbadawi@ucdavis.edu | |
Submit Date | 2014-11-06 |
Num Groups | 3 |
Total Subjects | 6 |
Raw Data Available | Yes |
Raw Data File Type(s) | cdf |
Uploaded File Size | 830 M |
Analysis Type Detail | GC-MS |
Release Date | 2014-11-06 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Combined analysis:
Analysis ID | AN000198 |
---|---|
Analysis type | MS |
Chromatography type | GC |
Chromatography system | Agilent 6890N |
Column | Restek corporation Rtx-5Sil MS |
MS Type | EI |
MS instrument type | GC-TOF |
MS instrument name | Leco Pegasus III GC TOF |
Ion Mode | POSITIVE |
Units | Peak area |
Chromatography:
Chromatography ID: | CH000131 |
Chromatography Summary: | Untargeted GC MS |
Methods Filename: | Data_Dictionary_Fiehn_laboratory_GCTOF_MS_primary_metabolism_09-27-2013_general.pdf |
Instrument Name: | Agilent 6890N |
Column Name: | Restek corporation Rtx-5Sil MS |
Column Temperature: | 50-330oC |
Flow Rate: | 1ml/min |
Internal Standard: | fatty acid methyl esters |
Sample Injection: | 0.5uL |
Oven Temperature: | 50C for 1 min, then ramped at 20C min-1 to 330C, held constant for 5 min |
Transferline Temperature: | 280C |
Washing Buffer: | Ethyl Acetate |
Sample Loop Size: | 30 m length x 0.25 mm internal diameter |
Randomization Order: | Excel generated |
Chromatography Type: | GC |