Summary of Study ST000508
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000381. The data can be accessed directly via it's Project DOI: 10.21228/M8SW34 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
| Study ID | ST000508 |
| Study Title | Metabolic Profiling of Date Palm Fruits |
| Study Summary | In this study, two independent large cohorts of mature dates exhibiting substantial diversity in origin, varieties and fruit processing conditions were measured by metabolomics techniques in order to identify major determinants of the fruit metabotype. Additional samples reflecting different stages of date fruit ripening process has been included for 10 different fruit varieties. |
| Institute | Weill Cornell Medicine, Qatar |
| Department | Bioinformatics Core |
| Laboratory | Suhre Lab |
| Last Name | Suhre |
| First Name | Karsten |
| Address | Education City |
| nis2034@qatar-med.cornell.edu | |
| Phone | +97433888408 |
| Submit Date | 2016-11-14 |
| Analysis Type Detail | GC-MS/LC-MS |
| Release Date | 2017-01-14 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Combined analysis:
| Analysis ID | AN000777 | AN000778 | AN000779 |
|---|---|---|---|
| Analysis type | MS | MS | MS |
| Chromatography type | GC | Reversed phase | Reversed phase |
| Chromatography system | Thermo-Finnigan Trace DSQ fast-scanning single-quadrupole mass spectrometer | Waters Acquity | Waters Acquity |
| Column | 5% diphenyl/ 95% dimethyl polysiloxane GC column | C18 reversed phase | C18 reversed phase |
| MS Type | EI | ESI | ESI |
| MS instrument type | Single quadrupole | Orbitrap | Orbitrap |
| MS instrument name | Thermo Trace DSQ | Thermo Orbitrap Elite Hybrid Ion Trap-Orbitrap | Thermo Orbitrap Elite Hybrid Ion Trap-Orbitrap |
| Ion Mode | POSITIVE | POSITIVE | NEGATIVE |
| Units | Counts per second (cps) | Counts per second (cps) | Counts per second (cps) |
Chromatography:
| Chromatography ID: | CH000557 |
| Chromatography Summary: | The 5% diphenyl/ 95% dimethyl polysiloxane GC column and the temperature ramp was from 40° to 300° C in a 16 minute period. Samples were analyzed on a Thermo-Finnigan Trace DSQ fast-scanning single-quadrupole mass spectrometer using electron impact ionization. The instrument was tuned and calibrated for mass resolution and mass accuracy on a daily basis. |
| Instrument Name: | Thermo-Finnigan Trace DSQ fast-scanning single-quadrupole mass spectrometer |
| Column Name: | 5% diphenyl/ 95% dimethyl polysiloxane GC column |
| Chromatography Type: | GC |
| Chromatography ID: | CH000558 |
| Chromatography Summary: | The LC/MS portion of the platform was based on a Waters ACQUITY ultra-performance liquid chromatography (UPLC) and a ThermoFisher Scientific Orbitrap Elite high resolution/accurate mass spectrometer, which consisted of a heated electrospray ionization (HESI) source and orbitrap mass analyzer operated at 30,000 mass resolution. The MS analysis alternated between MS and data-dependent MS2 scans using dynamic exclusion. |
| Instrument Name: | Waters Acquity |
| Column Name: | C18 reversed phase |
| Chromatography Type: | Reversed phase |
