Summary of Study ST002482
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001604. The data can be accessed directly via it's Project DOI: 10.21228/M8CB0R This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST002482 |
| Study Title | Non-targeted screening of natural products from 288 fungal endophytes from Canadian fruit crops |
| Study Summary | Fungal endophytes often live in symbiotic relationships with various plant hosts, conferring positive effects to their host organism. These endophytes frequently produce a wide variety of secondary metabolites with bioactivities that are often responsible for the beneficial effects seen in the host, such as antifungal or anti-insectan activity. A large group of fungal endophytes isolated from Canadian fruit crops including blueberries, raspberries, cranberries, grapes, and pears, was analyzed using molecular networking by GNPS in an effort to simplify the process of examining a large dataset. Molecular networking increased the speed and efficiency of examining this dataset, permitting the dereplication of 60 known compounds and the discovery of seven putative novel compounds, which will be purified, characterized, and tested for bioactivity in future studies. |
| Institute | Agriculture and Agri-Food Canada |
| Last Name | Renaud |
| First Name | Justin |
| Address | 1391 Sandford Street, London, Ontario, LN5V 4T3, Canada |
| justin.renaud@agr.gc.ca | |
| Phone | 519-953-6698 |
| Submit Date | 2022-01-06 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | mzML |
| Analysis Type Detail | LC-MS |
| Release Date | 2023-07-02 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Combined analysis:
| Analysis ID | AN004052 |
|---|---|
| Analysis type | MS |
| Chromatography type | Reversed phase |
| Chromatography system | Agilent 1290 Infinity II |
| Column | Agilent Zorbax Eclipse Plus C18 (100 x 2.1mm, 1.8 um) |
| MS Type | ESI |
| MS instrument type | Orbitrap |
| MS instrument name | Thermo Q Exactive Orbitrap |
| Ion Mode | POSITIVE |
| Units | Integrated peak area |
Chromatography:
| Chromatography ID: | CH002999 |
| Instrument Name: | Agilent 1290 Infinity II |
| Column Name: | Agilent Zorbax Eclipse Plus C18 (100 x 2.1mm, 1.8 um) |
| Column Temperature: | 35 |
| Flow Gradient: | 0% B for 0.5 min, increase to 100% B over 3 min, held for 2.5 min, decrease to 0% B over 0.5 min, hold for 1 min |
| Flow Rate: | 0.3 mL/min |
| Solvent A: | 100% acetonitrile; 0.1% formic acid |
| Solvent B: | 100% water; 0.1% formic acid |
| Chromatography Type: | Reversed phase |
