Summary of Study ST000835
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000595. The data can be accessed directly via it's Project DOI: 10.21228/M8RQ4G This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
Study ID | ST000835 |
Study Title | Deubiquitinase inhibitor compound C6 effect on cellular metabolism |
Study Type | MS analysis |
Study Summary | 6.0 X 10^6 cells were plated in 10 cm Tissue Culture dishes and allowed to recover overnight at 37 degrees and 5% CO2. In the am, supernatant was removed, and 12 mL of fresh medium with either 2.5 micromolar Compound C6 or a v/v match of DMSO (vehicle control) was added to the cells. Cells were incubated at 37 degrees in 5% CO2 for 30 minutes. Cells were washed 3X with cold DPBS++ and 10 mL of medium was added to the cells with either 1.0 micromolar Compound C6 or v/v match of DMSO. Cells were incubated at 37 degrees and 5% CO2 for 7.0 hours. Cells were washed with 10 mL of 150 mM Ammonium Acetate, swirled, washed again with 5 mL, and immediately quenched with liquid nitrogen. Cells were then frozen at -80 degrees. |
Institute | University of Michigan |
Department | Biomedical Research Core Facilities |
Laboratory | Metabolomics core |
Last Name | Kachman |
First Name | Maureen |
Address | 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714 |
mkachman@med.umich.edu | |
Phone | (734) 232-8175 |
Submit Date | 2017-08-02 |
Num Groups | 7 |
Total Subjects | 1 |
Study Comments | I request that the metabolites of the TCA+ assay that are to be assessed quantitatively please be sure to include ATP, ADP, AMP, NAD, NADH, NADP, NADPH, E4P, S7P, 6PG, G3P, H6P, and Lactate in particular. Also, I would request that both reduced and oxidized Glutathione as well as Fructose 1,6-bisphosphate be included in the non-quantitative data. |
Raw Data Available | Yes |
Raw Data File Type(s) | d |
Analysis Type Detail | LC-MS |
Release Date | 2018-02-07 |
Release Version | 1 |
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Factors:
Subject type: MOUSE; Subject species: Mus musculus (Factor headings shown in green)
mb_sample_id | local_sample_id | Sample type | Treatment | Type |
---|---|---|---|---|
SA046609 | S00026317 | Cell Line | DUB inhibitor | RAW |
SA046610 | S00026318 | Cell Line | DUB inhibitor | RAW |
SA046611 | S00026319 | Cell Line | DUB inhibitor | RAW |
SA046612 | S00026315 | Cell Line | DUB inhibitor | RAW |
SA046613 | S00026316 | Cell Line | DUB inhibitor | RAW |
SA046614 | S00026311 | Cell Line | Vehicle | RAW |
SA046615 | S00026310 | Cell Line | Vehicle | RAW |
SA046616 | S00026312 | Cell Line | Vehicle | RAW |
SA046617 | S00026313 | Cell Line | Vehicle | RAW |
SA046618 | S00026314 | Cell Line | Vehicle | RAW |
SA046619 | S00026320 | Macrophages | Control-Other_Cells | Primary BL6 BMM |
SA046620 | S00026321 | Macrophages | Control-Other_Cells | Primary BL6 BMM |
Showing results 1 to 12 of 12 |