Summary of Study ST002428
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001562. The data can be accessed directly via it's Project DOI: 10.21228/M8SM54 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST002428 |
| Study Title | Mass Spectrometry-based Proteomic and Metabolomic profiling of serum samples for discovery and validation of Tuberculosis diagnostic biomarker signature |
| Study Summary | Tuberculosis (TB) is a transmissible disease listed as one of the 10 leading causes of death worldwide (10 million infected in 2019). A swift and precise diagnosis is essential to forestall its transmission, for which is crucial the discovery of effective diagnostic biomarkers. In this study, we aimed to discover molecular biomarkers for the early diagnosis of tuberculosis. Two independent cohorts comprising 29 and 34 subjects were assayed by proteomics, and 49 were included for metabolomic analysis. All subjects were arranged into 3 experimental groups – healthy controls (Controls), Latent TB infection (LTBI) and TB patients. LC-MS/MS blood serum protein and metabolite levels were submitted to univariate, multivariate and ROC analysis. From the 149 proteins quantified in the discovery set, 25 were found to be differentially abundant between Controls and TB patients. The AUC, specificity and sensitivity, determined by ROC statistical analysis of the model composed by four of these proteins considering both proteomic sets, were 0.96; 93% and 91%, respectively. The five metabolites (9-methyluric acid, indole-3-lactic acid, trans-3-indoleacrylic acid, hexanoylglycine and N-acetyl-L-leucine) that better discriminate the control and TB patient groups (VIP > 1.75) from a total of 92 metabolites quantified in both ionization modes, were submitted to ROC analysis. An AUC=1 was determined with all samples being correctly assigned to the respective experimental group. An integrated ROC analysis enrolling 1 protein and 4 metabolites was also performed for the common control and TB patients in the proteomic and metabolomic groups. This combined signature has correctly assigned the 12 controls and 12 patients used only for prediction (AUC=1, specificity=100% and sensitivity=100%). This multi-omics approach has revealed a biomarker signature for tuberculosis diagnosis that could be potentially used for developing a point-of-care diagnosis clinical test. |
| Institute | ITQB NOVA |
| Laboratory | Proteomics of Non-Model Organisms |
| Last Name | Gonçalves |
| First Name | Luís |
| Address | Avenida Republica |
| lgafeira@itqb.unl.pt | |
| Phone | 214469464 |
| Submit Date | 2022-10-04 |
| Num Groups | 3 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | mzML |
| Analysis Type Detail | LC-MS |
| Release Date | 2023-01-20 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)
| mb_sample_id | local_sample_id | Label |
|---|---|---|
| SA242795 | C47 | Controls |
| SA242796 | C46 | Controls |
| SA242797 | C45 | Controls |
| SA242798 | C49 | Controls |
| SA242799 | C51 | Controls |
| SA242800 | C4 | Controls |
| SA242801 | C53 | Controls |
| SA242802 | C40 | Controls |
| SA242803 | C38 | Controls |
| SA242804 | C8 | Controls |
| SA242805 | C7 | Controls |
| SA242806 | C5 | Controls |
| SA242807 | C9 | Controls |
| SA242808 | C16 | Controls |
| SA242809 | C37 | Controls |
| SA242810 | C31 | Controls |
| SA242811 | C25 | Controls |
| SA242812 | C21 | Controls |
| SA242813 | DE55 | LTBI |
| SA242814 | CE57 | LTBI |
| SA242815 | C28 | LTBI |
| SA242816 | CE55 | LTBI |
| SA242817 | C30 | LTBI |
| SA242818 | CE54 | LTBI |
| SA242819 | DE10 | TB |
| SA242820 | DE5 | TB |
| SA242821 | D58 | TB |
| SA242822 | D56 | TB |
| SA242823 | DE11 | TB |
| SA242824 | D59 | TB |
| SA242825 | DE51 | TB |
| SA242826 | D28 | TB |
| SA242827 | DE53 | TB |
| SA242828 | DE54 | TB |
| SA242829 | DE52 | TB |
| SA242830 | DE12 | TB |
| SA242831 | D11 | TB |
| SA242832 | D15 | TB |
| SA242833 | D16 | TB |
| SA242834 | D13 | TB |
| SA242835 | D12 | TB |
| SA242836 | D10 | TB |
| SA242837 | D19 | TB |
| SA242838 | D20 | TB |
| SA242839 | D25 | TB |
| SA242840 | D26 | TB |
| SA242841 | D23 | TB |
| SA242842 | D22 | TB |
| SA242843 | D21 | TB |
| SA242844 | D27 | TB |
| Showing results 1 to 50 of 50 |
