Summary of Study ST002466
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001592. The data can be accessed directly via it's Project DOI: 10.21228/M8X712 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
Study ID | ST002466 |
Study Title | Deciphering the metabolomic differences between two fast-growing cyanobacteria, S.elongatus PCC 11801 and 11802 via 13C-metabolic flux analysis |
Study Summary | The study aims to identify the metabolic differences between two promising fast-growing, non-model cyanobacterial strains, S. elongatus PCC 11801 and PCC 11802. To this end, dynamic 13C-labeling experiments were carried out in the two cyanobacterial strains grown in shake flasks at a similar light intensity of approx. 300-350 µmole photons.m-2. s-1. The samples for metabolomics analysis were collected during the exponential growth phase at an optical cell density of 0.5-0.6. The detailed protocol for experiment can be found in the protocol file. |
Institute | Indian Institute of Technology Bombay |
Department | Chemical Engineering |
Last Name | Wangikar |
First Name | Pramod |
Address | Biosystems and Bioengineering Lab, Department of Chemical Engineering, IIT Bombay, Powai, Mumbai, Maharashtra, India -400076 |
wangikar@iitb.ac.in | |
Phone | +91 22 2576 72 32 |
Submit Date | 2023-01-26 |
Raw Data Available | Yes |
Raw Data File Type(s) | mzML |
Analysis Type Detail | LC-MS |
Release Date | 2023-07-05 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Bacteria; Subject species: Synechococcus elongatus (Factor headings shown in green)
mb_sample_id | local_sample_id | Time point of 13C labeling (s) | SWATH Program |
---|---|---|---|
SA247131 | PCC 11801 0 SEC SWATH1-2 BR2 | 0 | SWATH 1 |
SA247132 | PCC11801 0 SEC SWATH1-1 BR1 | 0 | SWATH 1 |
SA247133 | PCC11802 0 SEC SWATH1-1 BR2 | 0 | SWATH 1 |
SA247134 | PCC11802 0 SEC SWATH1-2 BR2 | 0 | SWATH 1 |
SA247135 | PCC 11801 0 SEC SWATH1-1 BR2 | 0 | SWATH 1 |
SA247136 | PCC 11802 0 SEC SWATH-1 BR1 | 0 | SWATH 1 |
SA247137 | PCC11801 0 SEC SWATH1-2 BR1 | 0 | SWATH 1 |
SA247138 | PCC11802 0 SEC SWATH2-1 BR2 | 0 | SWATH 2 |
SA247139 | PCC11802 0 SEC SWATH2-2 BR2 | 0 | SWATH 2 |
SA247140 | PCC11801 0 SEC SWATH2-1 BR1 | 0 | SWATH 2 |
SA247141 | PCC 11801 0 SEC SWATH2-2 BR2 | 0 | SWATH 2 |
SA247142 | PCC 11802 0 SEC SWATH-2 BR1 | 0 | SWATH 2 |
SA247143 | PCC 11801 0 SEC SWATH2-1 BR2 | 0 | SWATH 2 |
SA247144 | PCC11801 0 SEC SWATH2-2 BR1 | 0 | SWATH 2 |
SA247145 | PCC11802 0 SEC SWATH4-1 BR2 | 0 | SWATH 4 |
SA247146 | PCC 11801 0 SEC SWATH4-1 BR2 | 0 | SWATH 4 |
SA247147 | PCC11801 0 SEC SWATH4-2 BR1 | 0 | SWATH 4 |
SA247148 | PCC11801 0 SEC SWATH4-1 BR1 | 0 | SWATH 4 |
SA247149 | PCC11802 0 SEC SWATH4-2 BR2 | 0 | SWATH 4 |
SA247150 | PCC 11801 0 SEC SWATH4-2 BR2 | 0 | SWATH 4 |
SA247151 | PCC 11801 120 SEC SWATH1-2 BR2 | 120 | SWATH 1 |
SA247152 | PCC 11801 120 SEC SWATH1-1 BR2 | 120 | SWATH 1 |
SA247153 | PCC11801 120 SEC SWATH1-2 BR1 | 120 | SWATH 1 |
SA247154 | PCC 11802 120 SEC SWATH-1 BR1 | 120 | SWATH 1 |
SA247155 | PCC11802 120 SEC SWATH1-2 BR2 | 120 | SWATH 1 |
SA247156 | PCC11802 120 SEC SWATH1-1 BR2 | 120 | SWATH 1 |
SA247157 | PCC11801 120 SEC SWATH1-1 BR1 | 120 | SWATH 1 |
SA247158 | PCC11802 120 SEC SWATH2-1 BR2 | 120 | SWATH 2 |
SA247159 | PCC 11801 120 SEC SWATH2-2 BR2 | 120 | SWATH 2 |
SA247160 | PCC 11802 120 SEC SWATH-2 BR1 | 120 | SWATH 2 |
SA247161 | PCC11802 120 SEC SWATH2-2 BR2 | 120 | SWATH 2 |
SA247162 | PCC 11801 120 SEC SWATH2-1 BR2 | 120 | SWATH 2 |
SA247163 | PCC11801 120 SEC SWATH2-1 BR1 | 120 | SWATH 2 |
SA247164 | PCC11801 120 SEC SWATH2-2 BR1 | 120 | SWATH 2 |
SA247165 | PCC11802 120 SEC SWATH4-2 BR2 | 120 | SWATH 4 |
SA247166 | PCC11802 120 SEC SWATH4-1 BR2 | 120 | SWATH 4 |
SA247167 | PCC 11801 120 SEC SWATH4-1 BR2 | 120 | SWATH 4 |
SA247168 | PCC11801 120 SEC SWATH4-1 BR1 | 120 | SWATH 4 |
SA247169 | PCC 11801 120 SEC SWATH4-2 BR2 | 120 | SWATH 4 |
SA247170 | PCC11801 120 SEC SWATH4-2 BR1 | 120 | SWATH 4 |
SA247171 | PCC11802 1800 SEC SWATH1-2 BR2 | 1800 | SWATH 1 |
SA247172 | PCC 11801 1800 SEC SWATH1-2 BR1 | 1800 | SWATH 1 |
SA247173 | PCC11802 1800 SEC SWATH1-1 BR2 | 1800 | SWATH 1 |
SA247174 | PCC 11801 1800 SEC SWATH1-1 BR2 | 1800 | SWATH 1 |
SA247175 | PCC11802 1800 SEC SWATH1-1 BR1 | 1800 | SWATH 1 |
SA247176 | PCC 11801 1800 SEC SWATH1-1 BR1 | 1800 | SWATH 1 |
SA247177 | PCC 11801 1800 SEC SWATH1-2 BR2 | 1800 | SWATH 1 |
SA247178 | PCC 11801 1800 SEC SWATH2-1 BR2 | 1800 | SWATH 2 |
SA247179 | PCC11802 1800 SEC SWATH2-1 BR1 | 1800 | SWATH 2 |
SA247180 | PCC 11801 1800 SEC SWATH2-2 BR2 | 1800 | SWATH 2 |
SA247181 | PCC11802 1800 SEC SWATH2-1 BR2 | 1800 | SWATH 2 |
SA247182 | PCC11802 1800 SEC SWATH2-2 BR2 | 1800 | SWATH 2 |
SA247183 | PCC 11801 1800 SEC SWATH2-1 BR1 | 1800 | SWATH 2 |
SA247184 | PCC 11801 1800 SEC SWATH2-2 BR1 | 1800 | SWATH 2 |
SA247185 | PCC11802 1800 SEC SWATH4-1 BR1 | 1800 | SWATH 4 |
SA247186 | PCC11802 1800 SEC SWATH4-2 BR2 | 1800 | SWATH 4 |
SA247187 | PCC 11801 1800 SEC SWATH4-2 BR1 | 1800 | SWATH 4 |
SA247188 | PCC11802 1800 SEC SWATH4-1 BR2 | 1800 | SWATH 4 |
SA247189 | PCC 11801 1800 SEC SWATH4-2 BR2 | 1800 | SWATH 4 |
SA247190 | PCC 11801 1800 SEC SWATH4-1 BR1 | 1800 | SWATH 4 |
SA247191 | PCC 11801 1800 SEC SWATH4-1 BR2 | 1800 | SWATH 4 |
SA247192 | PCC 11801 180 SEC SWATH1-2 BR2 | 180 | SWATH 1 |
SA247193 | PCC11802 180 SEC SWATH1-2 BR2 | 180 | SWATH 1 |
SA247194 | PCC 11801 180 SEC SWATH1-1 BR2 | 180 | SWATH 1 |
SA247195 | PCC11802 180 SEC SWATH1-1 BR2 | 180 | SWATH 1 |
SA247196 | PCC 11802 180 SEC SWATH-1 BR1 | 180 | SWATH 1 |
SA247197 | PCC11801 180 SEC SWATH1-2 BR1 | 180 | SWATH 1 |
SA247198 | PCC11801 180 SEC SWATH1-1 BR1 | 180 | SWATH 1 |
SA247199 | PCC11801 180 SEC SWATH2-2 BR1 | 180 | SWATH 2 |
SA247200 | PCC 11801 180 SEC SWATH2-2 BR2 | 180 | SWATH 2 |
SA247201 | PCC11801 180 SEC SWATH2-1 BR1 | 180 | SWATH 2 |
SA247202 | PCC11802 180 SEC SWATH2-1 BR2 | 180 | SWATH 2 |
SA247203 | PCC11802 180 SEC SWATH2-2 BR2 | 180 | SWATH 2 |
SA247204 | PCC 11801 180 SEC SWATH2-1 BR2 | 180 | SWATH 2 |
SA247205 | PCC 11802 180 SEC SWATH-2 BR1 | 180 | SWATH 2 |
SA247206 | PCC11801 180 SEC SWATH4-1 BR1 | 180 | SWATH 4 |
SA247207 | PCC 11801 180 SEC SWATH4-1 BR2 | 180 | SWATH 4 |
SA247208 | PCC 11801 180 SEC SWATH4-2 BR2 | 180 | SWATH 4 |
SA247209 | PCC11802 180 SEC SWATH4-1 BR2 | 180 | SWATH 4 |
SA247210 | PCC11801 180 SEC SWATH4-2 BR1 | 180 | SWATH 4 |
SA247211 | PCC11802 180 SEC SWATH4-2 BR2 | 180 | SWATH 4 |
SA247212 | PCC11801 300 SEC SWATH1-1 BR1 | 300 | SWATH 1 |
SA247213 | PCC 11801 300 SEC SWATH1-1 BR2 | 300 | SWATH 1 |
SA247214 | PCC11801 300 SEC SWATH1-2 BR1 | 300 | SWATH 1 |
SA247215 | PCC11802 300 SEC SWATH1-2 BR2 | 300 | SWATH 1 |
SA247216 | PCC11802 300 SEC SWATH1-1 BR2 | 300 | SWATH 1 |
SA247217 | PCC 11802 300 SEC SWATH-1 BR1 | 300 | SWATH 1 |
SA247218 | PCC 11801 300 SEC SWATH1-2 BR2 | 300 | SWATH 1 |
SA247219 | PCC 11801 300 SEC SWATH2-1 BR2 | 300 | SWATH 2 |
SA247220 | PCC11802 300 SEC SWATH2-2 BR2 | 300 | SWATH 2 |
SA247221 | PCC 11801 300 SEC SWATH2-2 BR2 | 300 | SWATH 2 |
SA247222 | PCC11802 300 SEC SWATH2-1 BR2 | 300 | SWATH 2 |
SA247223 | PCC11801 300 SEC SWATH2-1 BR1 | 300 | SWATH 2 |
SA247224 | PCC 11802 300 SEC SWATH-2 BR1 | 300 | SWATH 2 |
SA247225 | PCC11801 300 SEC SWATH2-2 BR1 | 300 | SWATH 2 |
SA247226 | PCC11801 300 SEC SWATH4-1 BR1 | 300 | SWATH 4 |
SA247227 | PCC11801 300 SEC SWATH4-2 BR1 | 300 | SWATH 4 |
SA247228 | PCC11802 300 SEC SWATH4-1 BR2 | 300 | SWATH 4 |
SA247229 | PCC 11801 300 SEC SWATH4-1 BR2 | 300 | SWATH 4 |
SA247230 | PCC 11801 300 SEC SWATH4-2 BR2 | 300 | SWATH 4 |