Summary of Study ST002473
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001596. The data can be accessed directly via it's Project DOI: 10.21228/M8D701 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST002473 |
| Study Title | Linking bacterial metabolites to disease-associated microbes to uncover mechanisms of host-microbial interactions in intestinal inflammation. Veillonella parvula media profiling of IBD drug metabolites |
| Study Summary | Understanding the role of the gut microbiome in inflammatory and autoimmune diseases requires the identification of microbial molecular effectors and their link to host pathophysiology. Here, we present a framework to identify and characterize novel microbial metabolites in patient samples and to directly link their production to disease-associated microbes. We applied this approach to investigate the spectrum of disease severity and treatment response in ulcerative colitis (UC) using longitudinal metabolite and strain profiles combined with paired plasma profiles. |
| Institute | Broad Institute of MIT and Harvard |
| Last Name | Xavier |
| First Name | Ramnik |
| Address | 415 Main Street |
| rxavier@broadinstitute.org | |
| Phone | 617717084 |
| Submit Date | 2023-02-10 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | raw(Thermo) |
| Analysis Type Detail | LC-MS |
| Release Date | 2024-02-12 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Bacteria; Subject species: Veillonella parvula (Factor headings shown in green)
| mb_sample_id | local_sample_id | Strain | Drug |
|---|---|---|---|
| SA247736 | None_6_mercaptopurine_R1 | None | 6-mercaptopurine |
| SA247737 | None_6_mercaptopurine_R4 | None | 6-mercaptopurine |
| SA247738 | None_6_mercaptopurine_R3 | None | 6-mercaptopurine |
| SA247739 | None_6_mercaptopurine_R2 | None | 6-mercaptopurine |
| SA247740 | None_Azathioprine_R3 | None | Azathioprine |
| SA247741 | None_Azathioprine_R4 | None | Azathioprine |
| SA247742 | None_Azathioprine_R2 | None | Azathioprine |
| SA247743 | None_Azathioprine_R1 | None | Azathioprine |
| SA247744 | None_None_R3 | None | None |
| SA247745 | None_None_R4 | None | None |
| SA247746 | None_None_R2 | None | None |
| SA247747 | None_None_R1 | None | None |
| SA247760 | pucD_6_mercaptopurine_R4 | pucD | 6-mercaptopurine |
| SA247761 | pucD_6_mercaptopurine_R1 | pucD | 6-mercaptopurine |
| SA247762 | pucD_6_mercaptopurine_R2 | pucD | 6-mercaptopurine |
| SA247763 | pucD_6_mercaptopurine_R3 | pucD | 6-mercaptopurine |
| SA247764 | pucD_Azathioprine_R3 | pucD | Azathioprine |
| SA247765 | pucD_Azathioprine_R2 | pucD | Azathioprine |
| SA247766 | pucD_Azathioprine_R1 | pucD | Azathioprine |
| SA247767 | pucD_Azathioprine_R4 | pucD | Azathioprine |
| SA247768 | pucD_None_R2 | pucD | None |
| SA247769 | pucD_None_R3 | pucD | None |
| SA247770 | pucD_None_R1 | pucD | None |
| SA247771 | pucD_None_R4 | pucD | None |
| SA247748 | WT_6_mercaptopurine_R2 | WT | 6-mercaptopurine |
| SA247749 | WT_6_mercaptopurine_R4 | WT | 6-mercaptopurine |
| SA247750 | WT_6_mercaptopurine_R3 | WT | 6-mercaptopurine |
| SA247751 | WT_6_mercaptopurine_R1 | WT | 6-mercaptopurine |
| SA247752 | WT_Azathioprine_R1 | WT | Azathioprine |
| SA247753 | WT_Azathioprine_R3 | WT | Azathioprine |
| SA247754 | WT_Azathioprine_R2 | WT | Azathioprine |
| SA247755 | WT_Azathioprine_R4 | WT | Azathioprine |
| SA247756 | WT_None_R2 | WT | None |
| SA247757 | WT_None_R4 | WT | None |
| SA247758 | WT_None_R3 | WT | None |
| SA247759 | WT_None_R1 | WT | None |
| SA247772 | xdhA_6_mercaptopurine_R4 | xdhA | 6-mercaptopurine |
| SA247773 | xdhA_6_mercaptopurine_R1 | xdhA | 6-mercaptopurine |
| SA247774 | xdhA_6_mercaptopurine_R3 | xdhA | 6-mercaptopurine |
| SA247775 | xdhA_6_mercaptopurine_R2 | xdhA | 6-mercaptopurine |
| SA247776 | xdhA_Azathioprine_R3 | xdhA | Azathioprine |
| SA247777 | xdhA_Azathioprine_R4 | xdhA | Azathioprine |
| SA247778 | xdhA_Azathioprine_R2 | xdhA | Azathioprine |
| SA247779 | xdhA_Azathioprine_R1 | xdhA | Azathioprine |
| SA247780 | xdhA_None_R4 | xdhA | None |
| SA247781 | xdhA_None_R2 | xdhA | None |
| SA247782 | xdhA_None_R1 | xdhA | None |
| SA247783 | xdhA_None_R3 | xdhA | None |
| Showing results 1 to 48 of 48 |
