Summary of Study ST002509

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001620. The data can be accessed directly via it's Project DOI: 10.21228/M89B04 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST002509
Study TitleTime course 1: Growth of Eggerthella lenta in defined media
Study TypeUntargeted LC-MS
Study SummaryThis dataset contains untargeted metabolomics analysis of supernatants from 3 strains of Eggerthella lenta grown in defined EDM1 media with varying acetate concentrations.
Institute
University of California, San Francisco
Last NameNoecker
First NameCecilia
Address513 Parnassus Ave HSW1501, San Francisco, CA 94143
Emailcecilia.noecker@ucsf.edu
Phone415-502-3264
Submit Date2023-03-17
Raw Data AvailableYes
Raw Data File Type(s)mzML, raw(Thermo)
Analysis Type DetailLC-MS
Release Date2023-04-04
Release Version1
Cecilia Noecker Cecilia Noecker
https://dx.doi.org/10.21228/M89B04
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Factors:

Subject type: Bacteria; Subject species: Eggerthella lenta (Factor headings shown in green)

mb_sample_id local_sample_id Strain AcetateConcentration_mM Time
SA2524382243_0_TP1_1_R22243 0 16.5
SA2524392243_0_TP1_1_R32243 0 16.5
SA2524402243_0_TP1_1_R12243 0 16.5
SA2524412243_0_TP2_1_R32243 0 21.5
SA2524422243_0_TP2_1_R22243 0 21.5
SA2524432243_0_TP2_1_R12243 0 21.5
SA2524442243_0_TP3_1_R32243 0 26
SA2524452243_0_TP3_1_R22243 0 26
SA2524462243_0_TP3_1_R12243 0 26
SA2524472243_0_TP4_1_R32243 0 30
SA2524482243_0_TP4_1_R22243 0 30
SA2524492243_0_TP4_1_R12243 0 30
SA2524502243_0_TP5_1_R32243 0 42
SA2524512243_0_TP5_1_R22243 0 42
SA2524522243_0_TP5_1_R12243 0 42
SA2524532243_0_TP6_1_R32243 0 50
SA2524542243_0_TP6_1_R22243 0 50
SA2524552243_0_TP6_1_R12243 0 50
SA2524562243_10Add_TP1_1_R32243 10Add 16.5
SA2524572243_10Add_TP1_1_R22243 10Add 16.5
SA2524582243_10Add_TP1_1_R12243 10Add 16.5
SA2524592243_10Add_TP2_1_R32243 10Add 21.5
SA2524602243_10Add_TP2_1_R22243 10Add 21.5
SA2524612243_10Add_TP2_1_R12243 10Add 21.5
SA2524622243_10Add_TP3_1_R12243 10Add 26
SA2524632243_10Add_TP3_1_R32243 10Add 26
SA2524642243_10Add_TP3_1_R22243 10Add 26
SA2524652243_10Add_TP4_1_R12243 10Add 30
SA2524662243_10Add_TP4_1_R22243 10Add 30
SA2524672243_10Add_TP4_1_R32243 10Add 30
SA2524682243_10Add_TP5_1_R22243 10Add 42
SA2524692243_10Add_TP5_1_R32243 10Add 42
SA2524702243_10Add_TP5_1_R12243 10Add 42
SA2524712243_10Add_TP6_1_R32243 10Add 50
SA2524722243_10Add_TP6_1_R22243 10Add 50
SA2524732243_10Add_TP6_1_R12243 10Add 50
SA2524742243_10_TP1_1_R32243 10 16.5
SA2524752243_10_TP1_1_R12243 10 16.5
SA2524762243_10_TP1_1_R22243 10 16.5
SA2524772243_10_TP2_1_R22243 10 21.5
SA2524782243_10_TP2_1_R12243 10 21.5
SA2524792243_10_TP2_1_R32243 10 21.5
SA2524802243_10_TP3_1_R22243 10 26
SA2524812243_10_TP3_1_R32243 10 26
SA2524822243_10_TP3_1_R12243 10 26
SA2524832243_10_TP4_1_R32243 10 30
SA2524842243_10_TP4_1_R12243 10 30
SA2524852243_10_TP4_1_R22243 10 30
SA2524862243_10_TP5_1_R22243 10 42
SA2524872243_10_TP5_1_R12243 10 42
SA2524882243_10_TP5_1_R32243 10 42
SA2524892243_10_TP6_1_R32243 10 50
SA2524902243_10_TP6_1_R12243 10 50
SA2524912243_10_TP6_1_R22243 10 50
SA2524922243_1_TP1_1_R22243 1 16.5
SA2524932243_1_TP1_1_R12243 1 16.5
SA2524942243_1_TP1_1_R32243 1 16.5
SA2524952243_1_TP2_1_R12243 1 21.5
SA2524962243_1_TP2_1_R22243 1 21.5
SA2524972243_1_TP2_1_R32243 1 21.5
SA2524982243_1_TP3_1_R22243 1 26
SA2524992243_1_TP3_1_R32243 1 26
SA2525002243_1_TP3_1_R12243 1 26
SA2525012243_1_TP4_1_R12243 1 30
SA2525022243_1_TP4_1_R22243 1 30
SA2525032243_1_TP5_1_R22243 1 42
SA2525042243_1_TP5_1_R12243 1 42
SA2525052243_1_TP5_1_R32243 1 42
SA2525062243_1_TP6_1_R22243 1 50
SA2525072243_1_TP6_1_R32243 1 50
SA2525082243_1_TP6_1_R12243 1 50
SA252509AB8_0_TP1_1_R3AB8 0 16.5
SA252510AB8_0_TP1_1_R2AB8 0 16.5
SA252511AB8_0_TP1_1_R1AB8 0 16.5
SA252512AB8_0_TP2_1_R1AB8 0 21.5
SA252513AB8_0_TP2_1_R3AB8 0 21.5
SA252514AB8_0_TP2_1_R2AB8 0 21.5
SA252515AB8_0_TP3_1_R1AB8 0 26
SA252516AB8_0_TP3_1_R2AB8 0 26
SA252517AB8_0_TP4_1_R2AB8 0 30
SA252518AB8_0_TP4_1_R3AB8 0 30
SA252519AB8_0_TP4_1_R1AB8 0 30
SA252520AB8_0_TP5_1_R2AB8 0 42
SA252521AB8_0_TP5_1_R3AB8 0 42
SA252522AB8_0_TP5_1_R1AB8 0 42
SA252523AB8_0_TP6_1_R2AB8 0 50
SA252524AB8_0_TP6_1_R3AB8 0 50
SA252525AB8_0_TP6_1_R1AB8 0 50
SA252526AB8_10_TP1_1_R3AB8 10 16.5
SA252527AB8_10_TP1_1_R1AB8 10 16.5
SA252528AB8_10_TP1_1_R2AB8 10 16.5
SA252529AB8_10_TP2_1_R1AB8 10 21.5
SA252530AB8_10_TP2_1_R2AB8 10 21.5
SA252531AB8_10_TP2_1_R3AB8 10 21.5
SA252532AB8_10_TP3_1_R1AB8 10 26
SA252533AB8_10_TP3_1_R2AB8 10 26
SA252534AB8_10_TP3_1_R3AB8 10 26
SA252535AB8_10_TP4_1_R3AB8 10 30
SA252536AB8_10_TP4_1_R2AB8 10 30
SA252537AB8_10_TP4_1_R1AB8 10 30
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