Summary of Study ST002512
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001620. The data can be accessed directly via it's Project DOI: 10.21228/M89B04 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST002512 |
| Study Title | Gnotobiotic mice: Metabolites in intestinal contents of germ-free mice colonized with strains of gut bacterium Eggerthella lenta |
| Study Type | Untargeted LC-MS |
| Study Summary | This dataset contains untargeted metabolomics analysis of intestinal contents of gnotobiotic mice either colonized with different strains of Eggerthella lenta for 2 weeks, or germ-free controls. |
| Institute | University of California, San Francisco |
| Last Name | Noecker |
| First Name | Cecilia |
| Address | 513 Parnassus Ave HSW1501, San Francisco, CA 94143 |
| cecilia.noecker@ucsf.edu | |
| Phone | 415-502-3264 |
| Submit Date | 2023-03-21 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | mzML, raw(Thermo) |
| Analysis Type Detail | LC-MS |
| Release Date | 2023-04-10 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Mammal; Subject species: Mus musculus (Factor headings shown in green)
| mb_sample_id | local_sample_id | SampleType | Group |
|---|---|---|---|
| SA252900 | Cecal_El15644_7 | Cecal | 15644 |
| SA252901 | Cecal_El15644_23 | Cecal | 15644 |
| SA252902 | Cecal_El15644_14 | Cecal | 15644 |
| SA252903 | Cecal_El15644_21 | Cecal | 15644 |
| SA252904 | Cecal_El15644_22 | Cecal | 15644 |
| SA252905 | Cecal_El15644_6 | Cecal | 15644 |
| SA252906 | Cecal_El2243_5 | Cecal | 2243 |
| SA252907 | Cecal_El2243_12 | Cecal | 2243 |
| SA252908 | Cecal_El2243_13 | Cecal | 2243 |
| SA252909 | Cecal_El2243_25 | Cecal | 2243 |
| SA252910 | Cecal_El2243_4 | Cecal | 2243 |
| SA252911 | Cecal_ElAB12n2_17 | Cecal | AB12n2 |
| SA252912 | Cecal_ElAB12n2_11 | Cecal | AB12n2 |
| SA252913 | Cecal_ElAB12n2_10 | Cecal | AB12n2 |
| SA252914 | Cecal_ElAB12n2_16 | Cecal | AB12n2 |
| SA252915 | Cecal_ElAB12n2_18 | Cecal | AB12n2 |
| SA252916 | Cecal_ElAB12n2_29 | Cecal | AB12n2 |
| SA252917 | Cecal_ElAB12n2_28 | Cecal | AB12n2 |
| SA252918 | Cecal_ElAB12n2_30 | Cecal | AB12n2 |
| SA252919 | Cecal_GF_3 | Cecal | GF |
| SA252920 | Cecal_GF_27 | Cecal | GF |
| SA252921 | Cecal_GF_2 | Cecal | GF |
| SA252922 | Cecal_GF_26 | Cecal | GF |
| SA252923 | Cecal_GF_1 | Cecal | GF |
| SA252862 | pool_1 | - | - |
| SA252863 | bk_3(1) | - | - |
| SA252864 | bk_3 | - | - |
| SA252865 | SI_pool_0 | - | - |
| SA252866 | pool_2 | - | - |
| SA252867 | bk_2 | - | - |
| SA252868 | pool_3 | - | - |
| SA252869 | preBk | - | - |
| SA252870 | Bk_1 | - | - |
| SA252871 | SI_pool_1 | - | - |
| SA252872 | SI_pool_2 | - | - |
| SA252873 | Cecal_pool_3 | - | - |
| SA252874 | LI_pool_3 | - | - |
| SA252875 | LI_pool_2 | - | - |
| SA252876 | LI_pool_1 | - | - |
| SA252877 | Cecal_pool_2 | - | - |
| SA252878 | Cecal_pool_1 | - | - |
| SA252879 | SI_pool_3 | - | - |
| SA252880 | SI_El2243_24 | - | - |
| SA252881 | Cecal_pool_0 | - | - |
| SA252882 | bk_1 | - | - |
| SA252883 | bk_1(1) | - | - |
| SA252884 | Bk_4 | - | - |
| SA252885 | Bk_5 | - | - |
| SA252886 | Bk_6 | - | - |
| SA252887 | Bk_7 | - | - |
| SA252888 | Bk_3(1) | - | - |
| SA252889 | Bk_3 | - | - |
| SA252890 | Bk_1(1) | - | - |
| SA252891 | Bk_10 | - | - |
| SA252892 | Bk_11 | - | - |
| SA252893 | Bk_2(1) | - | - |
| SA252894 | Bk_8 | - | - |
| SA252895 | Bk_9 | - | - |
| SA252896 | LI_pool_0 | - | - |
| SA252897 | bk_12 | - | - |
| SA252898 | bk_11(1) | - | - |
| SA252899 | Cecal_El2243_24 | - | - |
| SA252924 | LI_El15644_22 | LI | 15644 |
| SA252925 | LI_El15644_21 | LI | 15644 |
| SA252926 | LI_El15644_14 | LI | 15644 |
| SA252927 | LI_El15644_23 | LI | 15644 |
| SA252928 | LI_El15644_6 | LI | 15644 |
| SA252929 | LI_El15644_7 | LI | 15644 |
| SA252930 | LI_El2243_25 | LI | 2243 |
| SA252931 | LI_El2243_4 | LI | 2243 |
| SA252932 | LI_El2243_24 | LI | 2243 |
| SA252933 | LI_El2243_13 | LI | 2243 |
| SA252934 | LI_El2243_12 | LI | 2243 |
| SA252935 | LI_El2243_5 | LI | 2243 |
| SA252936 | LI_ElAB12n2_11 | LI | AB12n2 |
| SA252937 | LI_ElAB12n2_17 | LI | AB12n2 |
| SA252938 | LI_ElAB12n2_16 | LI | AB12n2 |
| SA252939 | LI_ElAB12n2_18 | LI | AB12n2 |
| SA252940 | LI_ElAB12n2_30 | LI | AB12n2 |
| SA252941 | LI_ElAB12n2_29 | LI | AB12n2 |
| SA252942 | LI_ElAB12n2_28 | LI | AB12n2 |
| SA252943 | LI_ElAB12n2_10 | LI | AB12n2 |
| SA252944 | LI_GF_3 | LI | GF |
| SA252945 | LI_GF_26 | LI | GF |
| SA252946 | LI_GF_27 | LI | GF |
| SA252947 | LI_GF_2 | LI | GF |
| SA252948 | LI_GF_1 | LI | GF |
| SA252949 | SI_El15644_23 | SI | 15644 |
| SA252950 | SI_El15644_22 | SI | 15644 |
| SA252951 | SI_El15644_14 | SI | 15644 |
| SA252952 | SI_El15644_7 | SI | 15644 |
| SA252953 | SI_El15644_21 | SI | 15644 |
| SA252954 | SI_El15644_6 | SI | 15644 |
| SA252955 | SI_El2243_13 | SI | 2243 |
| SA252956 | SI_El2243_12 | SI | 2243 |
| SA252957 | SI_El2243_5 | SI | 2243 |
| SA252958 | SI_El2243_25 | SI | 2243 |
| SA252959 | SI_El2243_4 | SI | 2243 |
| SA252960 | SI_ElAB12n2_11 | SI | AB12n2 |
| SA252961 | SI_ElAB12n2_17 | SI | AB12n2 |
