Summary of Study ST002515
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001620. The data can be accessed directly via it's Project DOI: 10.21228/M89B04 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST002515 |
| Study Title | Time course 2: Acetate quantification from growth of Eggerthella lenta in defined media |
| Study Type | Untargeted LC-MS |
| Study Summary | This dataset contains targeted metabolomics analysis of carboxylic acids in supernatants from 3 strains of Eggerthella lenta grown in defined EDM1 media with varying acetate concentrations. |
| Institute | University of California, San Francisco |
| Last Name | Noecker |
| First Name | Cecilia |
| Address | 513 Parnassus Ave HSW1501, San Francisco, CA 94143 |
| cecilia.noecker@ucsf.edu | |
| Phone | 415-502-3264 |
| Submit Date | 2023-03-21 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | d, mzML |
| Analysis Type Detail | LC-MS |
| Release Date | 2023-04-10 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Bacteria; Subject species: Eggerthella lenta (Factor headings shown in green)
| mb_sample_id | local_sample_id | Strain | AcetateConc | TimePoint | Time |
|---|---|---|---|---|---|
| SA253097 | P1-E02 | 2243 | 0 | TP4 | 28.5 |
| SA253098 | P1-E05 | 2243 | 0 | TP4 | 28.5 |
| SA253099 | P1-B03 | 2243 | 0 | TP4 | 28.5 |
| SA253100 | P1-E03 | 2243 | 0 | TP7 | 47.5 |
| SA253101 | P1-E07 | 2243 | 0 | TP7 | 47.5 |
| SA253102 | P1-E09 | 2243 | 0 | TP7 | 47.5 |
| SA253103 | P1-G05 | 2243 | 10 | TP4 | 28.5 |
| SA253104 | P1-C02 | 2243 | 10 | TP4 | 28.5 |
| SA253105 | P1-C05 | 2243 | 10 | TP4 | 28.5 |
| SA253106 | P1-C09 | 2243 | 10 | TP7 | 47.5 |
| SA253107 | P1-G07 | 2243 | 10 | TP7 | 47.5 |
| SA253108 | P1-C07 | 2243 | 10 | TP7 | 47.5 |
| SA253109 | P1-A11 | 2243 | 10 | TP8 | 64 |
| SA253110 | P1-C11 | 2243 | 10 | TP8 | 64 |
| SA253111 | P1-E11 | 2243 | 10 | TP8 | 64 |
| SA253112 | P1-A02 | 2243 | 1 | TP4 | 28.5 |
| SA253113 | P1-A05 | 2243 | 1 | TP4 | 28.5 |
| SA253114 | P1-G02 | 2243 | 1 | TP4 | 28.5 |
| SA253115 | P1-G09 | 2243 | 1 | TP7 | 47.5 |
| SA253116 | P1-A09 | 2243 | 1 | TP7 | 47.5 |
| SA253117 | P1-A07 | 2243 | 1 | TP7 | 47.5 |
| SA253118 | P1-C10 | 2243 | 1 | TP8 | 64 |
| SA253119 | P1-A10 | 2243 | 1 | TP8 | 64 |
| SA253120 | P1-E10 | 2243 | 1 | TP8 | 64 |
| SA253121 | P1-F02 | AB8 | 0 | TP4 | 28.5 |
| SA253122 | P1-F05 | AB8 | 0 | TP4 | 28.5 |
| SA253123 | P1-C03 | AB8 | 0 | TP4 | 28.5 |
| SA253124 | P1-F03 | AB8 | 0 | TP7 | 47.5 |
| SA253125 | P1-F09 | AB8 | 0 | TP7 | 47.5 |
| SA253126 | P1-F07 | AB8 | 0 | TP7 | 47.5 |
| SA253127 | P1-A12 | AB8 | 10 | TP4 | 28.5 |
| SA253128 | P1-D05 | AB8 | 10 | TP4 | 28.5 |
| SA253129 | P1-D02 | AB8 | 10 | TP4 | 28.5 |
| SA253130 | P1-D07 | AB8 | 10 | TP7 | 47.5 |
| SA253131 | P1-B12 | AB8 | 10 | TP7 | 47.5 |
| SA253132 | P1-D09 | AB8 | 10 | TP7 | 47.5 |
| SA253133 | P1-B11 | AB8 | 10 | TP8 | 64 |
| SA253134 | P1-D11 | AB8 | 10 | TP8 | 64 |
| SA253135 | P1-F11 | AB8 | 10 | TP8 | 64 |
| SA253136 | P1-B05 | AB8 | 1 | TP4 | 28.5 |
| SA253137 | P1-G03 | AB8 | 1 | TP4 | 28.5 |
| SA253138 | P1-B02 | AB8 | 1 | TP4 | 28.5 |
| SA253139 | P1-B07 | AB8 | 1 | TP7 | 47.5 |
| SA253140 | P1-C12 | AB8 | 1 | TP7 | 47.5 |
| SA253141 | P1-B09 | AB8 | 1 | TP7 | 47.5 |
| SA253142 | P1-B10 | AB8 | 1 | TP8 | 64 |
| SA253143 | P1-F10 | AB8 | 1 | TP8 | 64 |
| SA253144 | P1-D10 | AB8 | 1 | TP8 | 64 |
| SA253065 | Std_PBSSt_07 | - | - | - | - |
| SA253066 | Std_PBSSt_05 | - | - | - | - |
| SA253067 | Std_PBSSt_06 | - | - | - | - |
| SA253068 | Std_PBSSt_08 | - | - | - | - |
| SA253069 | Std_PBSSt_11 | - | - | - | - |
| SA253070 | Std_PBSSt_10 | - | - | - | - |
| SA253071 | Std_PBSSt_09 | - | - | - | - |
| SA253072 | Std_PBSSt_04 | - | - | - | - |
| SA253073 | Std_PBSSt_03 | - | - | - | - |
| SA253074 | PooledQC_01 | - | - | - | - |
| SA253075 | Blank_01 | - | - | - | - |
| SA253076 | PooledQC_02 | - | - | - | - |
| SA253077 | PooledQC_03 | - | - | - | - |
| SA253078 | Std_PBSSt_02 | - | - | - | - |
| SA253079 | Std_PBSSt_01 | - | - | - | - |
| SA253080 | Std_PBSSt_12 | - | - | - | - |
| SA253081 | Std_mSt_02 | - | - | - | - |
| SA253082 | Std_mSt_12 | - | - | - | - |
| SA253083 | Std_mSt_11 | - | - | - | - |
| SA253084 | Std_mSt_10 | - | - | - | - |
| SA253085 | Blank_05 | - | - | - | - |
| SA253086 | Blank_04 | - | - | - | - |
| SA253087 | Blank_02 | - | - | - | - |
| SA253088 | Blank_03 | - | - | - | - |
| SA253089 | Std_mSt_09 | - | - | - | - |
| SA253090 | Std_mSt_08 | - | - | - | - |
| SA253091 | Std_mSt_04 | - | - | - | - |
| SA253092 | Std_mSt_03 | - | - | - | - |
| SA253093 | Std_mSt_01 | - | - | - | - |
| SA253094 | Std_mSt_05 | - | - | - | - |
| SA253095 | Std_mSt_06 | - | - | - | - |
| SA253096 | Std_mSt_07 | - | - | - | - |
| SA253163 | P1-E04 | c | 0 | TP4 | - |
| SA253164 | P1-E01 | c | 0 | TP4 | - |
| SA253165 | P1-E08 | c | 0 | TP7 | - |
| SA253166 | P1-E06 | c | 0 | TP7 | - |
| SA253167 | P1-C04 | c | 10 | TP4 | - |
| SA253168 | P1-C01 | c | 10 | TP4 | - |
| SA253169 | P1-C06 | c | 10 | TP7 | - |
| SA253170 | P1-C08 | c | 10 | TP7 | - |
| SA253171 | P1-E12 | c | 10 | TP8 | - |
| SA253172 | P1-G11 | c | 10 | TP8 | - |
| SA253173 | P1-A01 | c | 1 | TP4 | - |
| SA253174 | P1-A04 | c | 1 | TP4 | - |
| SA253175 | P1-A06 | c | 1 | TP7 | - |
| SA253176 | P1-A08 | c | 1 | TP7 | - |
| SA253177 | P1-D12 | c | 1 | TP8 | - |
| SA253178 | P1-G10 | c | 1 | TP8 | - |
| SA253145 | P1-F04 | Val | 0 | TP4 | 28.5 |
| SA253146 | P1-A03 | Val | 0 | TP4 | 28.5 |
| SA253147 | P1-F01 | Val | 0 | TP4 | 28.5 |
| SA253148 | P1-D03 | Val | 0 | TP7 | 47.5 |
