Summary of Study ST002516

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001620. The data can be accessed directly via it's Project DOI: 10.21228/M89B04 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST002516
Study TitleTime course 2: Growth of Eggerthella lenta in defined media with some samples receiving 13C2 stable isotope labeled acetate
Study TypeUntargeted LC-MS
Study SummaryThis dataset contains untargeted metabolomics analysis of supernatants from 3 strains of Eggerthella lenta grown in defined EDM1 media with varying acetate concentrations. One set of samples grew in EDM1 containing 13C2 stable isotope labeled acetate.
Institute
University of California, San Francisco
Last NameNoecker
First NameCecilia
Address513 Parnassus Ave HSW1501, San Francisco, CA 94143
Emailcecilia.noecker@ucsf.edu
Phone415-502-3264
Submit Date2023-03-22
Raw Data AvailableYes
Raw Data File Type(s)mzML, raw(Thermo)
Analysis Type DetailLC-MS
Release Date2023-04-10
Release Version1
Cecilia Noecker Cecilia Noecker
https://dx.doi.org/10.21228/M89B04
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Factors:

Subject type: Bacteria; Subject species: Eggerthella lenta (Factor headings shown in green)

mb_sample_id local_sample_id Strain2 AcetateGroup TimePoint Time
SA2532162243_0_TP0_12243 0 TP0 0
SA2532172243_0_TP0_32243 0 TP0 0
SA2532182243_0_TP0_22243 0 TP0 0
SA2532192243_0_TP1_32243 0 TP1 15
SA2532202243_0_TP1_12243 0 TP1 15
SA2532212243_0_TP1_22243 0 TP1 15
SA2532222243_0_TP2_22243 0 TP2 18.5
SA2532232243_0_TP2_32243 0 TP2 18.5
SA2532242243_0_TP2_12243 0 TP2 18.5
SA2532252243_0_TP3_32243 0 TP3 23
SA2532262243_0_TP3_22243 0 TP3 23
SA2532272243_0_TP3_12243 0 TP3 23
SA2532282243_0_TP4_32243 0 TP4 28.5
SA2532292243_0_TP4_12243 0 TP4 28.5
SA2532302243_0_TP4_22243 0 TP4 28.5
SA2532312243_0_TP5_32243 0 TP5 39
SA2532322243_0_TP5_12243 0 TP5 39
SA2532332243_0_TP5_22243 0 TP5 39
SA2532342243_0_TP6_12243 0 TP6 43
SA2532352243_0_TP6_32243 0 TP6 43
SA2532362243_0_TP6_22243 0 TP6 43
SA2532372243_0_TP7_32243 0 TP7 47.5
SA2532382243_0_TP7_22243 0 TP7 47.5
SA2532392243_0_TP7_12243 0 TP7 47.5
SA2532402243_0_TP8_12243 0 TP8 64
SA2532412243_0_TP8_22243 0 TP8 64
SA2532422243_0_TP8_32243 0 TP8 64
SA2532432243_10L_TP0_12243 10L TP0 0
SA2532442243_10L_TP0_32243 10L TP0 0
SA2532452243_10L_TP0_22243 10L TP0 0
SA2532462243_10L_TP1_32243 10L TP1 15
SA2532472243_10L_TP1_12243 10L TP1 15
SA2532482243_10L_TP1_22243 10L TP1 15
SA2532492243_10L_TP2_12243 10L TP2 18.5
SA2532502243_10L_TP2_22243 10L TP2 18.5
SA2532512243_10L_TP2_32243 10L TP2 18.5
SA2532522243_10L_TP3_12243 10L TP3 23
SA2532532243_10L_TP3_22243 10L TP3 23
SA2532542243_10L_TP3_32243 10L TP3 23
SA2532552243_1L_TP4_22243 10L TP4 28.5
SA2532562243_1L_TP4_12243 10L TP4 28.5
SA2532572243_1L_TP4_32243 10L TP4 28.5
SA2532582243_1L_TP5_32243 10L TP5 39
SA2532592243_1L_TP5_12243 10L TP5 39
SA2532602243_1L_TP5_22243 10L TP5 39
SA2532612243_1L_TP6_32243 10L TP6 43
SA2532622243_1L_TP6_22243 10L TP6 43
SA2532632243_1L_TP6_12243 10L TP6 43
SA2532642243_1L_TP7_22243 10L TP7 47.5
SA2532652243_1L_TP7_12243 10L TP7 47.5
SA2532662243_1L_TP7_32243 10L TP7 47.5
SA2532672243_10L_TP8_12243 10L TP8 64
SA2532682243_10L_TP8_32243 10L TP8 64
SA2532692243_10L_TP8_22243 10L TP8 64
SA2532702243_10_TP0_22243 10 TP0 0
SA2532712243_10_TP0_32243 10 TP0 0
SA2532722243_10_TP0_12243 10 TP0 0
SA2532732243_10_TP1_22243 10 TP1 15
SA2532742243_10_TP1_12243 10 TP1 15
SA2532752243_10_TP1_32243 10 TP1 15
SA2532762243_10_TP2_22243 10 TP2 18.5
SA2532772243_10_TP2_32243 10 TP2 18.5
SA2532782243_10_TP2_12243 10 TP2 18.5
SA2532792243_10_TP3_12243 10 TP3 23
SA2532802243_10_TP3_32243 10 TP3 23
SA2532812243_10_TP3_22243 10 TP3 23
SA2532822243_1_TP4_32243 10 TP4 28.5
SA2532832243_1_TP4_22243 10 TP4 28.5
SA2532842243_1_TP4_12243 10 TP4 28.5
SA2532852243_1_TP5_22243 10 TP5 39
SA2532862243_1_TP5_12243 10 TP5 39
SA2532872243_1_TP5_32243 10 TP5 39
SA2532882243_1_TP6_12243 10 TP6 43
SA2532892243_1_TP6_32243 10 TP6 43
SA2532902243_1_TP6_22243 10 TP6 43
SA2532912243_1_TP7_22243 10 TP7 47.5
SA2532922243_1_TP7_32243 10 TP7 47.5
SA2532932243_1_TP7_12243 10 TP7 47.5
SA2532942243_10_TP8_32243 10 TP8 64
SA2532952243_10_TP8_22243 10 TP8 64
SA2532962243_10_TP8_12243 10 TP8 64
SA2532972243_1L_TP0_12243 1L TP0 0
SA2532982243_1L_TP0_32243 1L TP0 0
SA2532992243_1L_TP0_22243 1L TP0 0
SA2533002243_1L_TP1_22243 1L TP1 15
SA2533012243_1L_TP1_12243 1L TP1 15
SA2533022243_1L_TP1_32243 1L TP1 15
SA2533032243_1L_TP2_12243 1L TP2 18.5
SA2533042243_1L_TP2_22243 1L TP2 18.5
SA2533052243_1L_TP2_32243 1L TP2 18.5
SA2533062243_1L_TP3_32243 1L TP3 23
SA2533072243_1L_TP3_22243 1L TP3 23
SA2533082243_1L_TP3_12243 1L TP3 23
SA2533092243_10L_TP4_22243 1L TP4 28.5
SA2533102243_10L_TP4_12243 1L TP4 28.5
SA2533112243_10L_TP4_32243 1L TP4 28.5
SA2533122243_10L_TP5_12243 1L TP5 39
SA2533132243_10L_TP5_22243 1L TP5 39
SA2533142243_10L_TP6_32243 1L TP6 43
SA2533152243_10L_TP6_22243 1L TP6 43
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