Summary of Study ST002517

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001620. The data can be accessed directly via it's Project DOI: 10.21228/M89B04 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST002517
Study TitleTime course 2: Growth of Eggerthella lenta in defined media with some samples receiving 13C2 stable isotope labeled acetate (intracellular samples)
Study TypeUntargeted LC-MS
Study SummaryThis dataset contains untargeted metabolomics analysis of supernatants from 3 strains of Eggerthella lenta grown in defined EDM1 media with varying acetate concentrations. One set of samples grew in EDM1 containing 13C2 stable isotope labeled acetate. Samples were collected at a subset of time points for extraction of intracellular metabolites.
Institute
University of California, San Francisco
Last NameNoecker
First NameCecilia
Address513 Parnassus Ave HSW1501, San Francisco, CA 94143
Emailcecilia.noecker@ucsf.edu
Phone415-502-3264
Submit Date2023-03-22
Raw Data AvailableYes
Raw Data File Type(s)mzML, raw(Thermo)
Analysis Type DetailLC-MS
Release Date2023-04-10
Release Version1
Cecilia Noecker Cecilia Noecker
https://dx.doi.org/10.21228/M89B04
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Factors:

Subject type: Bacteria; Subject species: Eggerthella lenta (Factor headings shown in green)

mb_sample_id local_sample_id Strain AcetateGroup TimePoint Time
SA2537682243_Ac0_2_TP4i2243 0 TP3 23
SA2537692243_Ac0_3_TP4i2243 0 TP3 23
SA2537702243_Ac0_1_TP4i2243 0 TP3 23
SA2537712243_Ac0_3_TP6i2243 0 TP5 39
SA2537722243_Ac0_2_TP6i2243 0 TP5 39
SA2537732243_Ac0_1_TP6i2243 0 TP5 39
SA2537742243_Ac10L_3_TP4i2243 10L TP3 23
SA2537752243_Ac10L_2_TP4i2243 10L TP3 23
SA2537762243_Ac10L_1_TP4i2243 10L TP3 23
SA2537772243_Ac10L_2_TP6i2243 10L TP5 39
SA2537782243_Ac10L_3_TP6i2243 10L TP5 39
SA2537792243_Ac10L_1_TP6i2243 10L TP5 39
SA2537802243_Ac10_1_TP4i2243 10 TP3 23
SA2537812243_Ac10_2_TP4i2243 10 TP3 23
SA2537822243_Ac10_3_TP4i2243 10 TP3 23
SA2537832243_Ac10_3_TP6i2243 10 TP5 39
SA2537842243_Ac10_1_TP6i2243 10 TP5 39
SA2537852243_Ac10_2_TP6i2243 10 TP5 39
SA2537862243_Ac1L_1_TP4i2243 1L TP3 23
SA2537872243_Ac1L_3_TP4i2243 1L TP3 23
SA2537882243_Ac1L_2_TP4i2243 1L TP3 23
SA2537892243_Ac1L_1_TP6i2243 1L TP5 39
SA2537902243_Ac1L_2_TP6i2243 1L TP5 39
SA2537912243_Ac1L_3_TP6i2243 1L TP5 39
SA2537922243_Ac1_1_TP4i2243 1 TP3 23
SA2537932243_Ac1_2_TP4i2243 1 TP3 23
SA2537942243_Ac1_3_TP4i2243 1 TP3 23
SA2537952243_Ac1_3_TP6i2243 1 TP5 39
SA2537962243_Ac1_1_TP6i2243 1 TP5 39
SA2537972243_Ac1_2_TP6i2243 1 TP5 39
SA253798AB8n2_Ac0_1_TP4iAB8n2 0 TP3 23
SA253799AB8n2_Ac0_2_TP4iAB8n2 0 TP3 23
SA253800AB8n2_Ac0_3_TP4iAB8n2 0 TP3 23
SA253801AB8n2_Ac0_3_TP6iAB8n2 0 TP5 39
SA253802AB8n2_Ac0_1_TP6iAB8n2 0 TP5 39
SA253803AB8n2_Ac0_2_TP6iAB8n2 0 TP5 39
SA253804AB8n2_Ac10L_1_TP4iAB8n2 10L TP3 23
SA253805AB8n2_Ac10L_3_TP4iAB8n2 10L TP3 23
SA253806AB8n2_Ac10L_2_TP4iAB8n2 10L TP3 23
SA253807AB8n2_Ac10L_2_TP6iAB8n2 10L TP5 39
SA253808AB8n2_Ac10L_1_TP6iAB8n2 10L TP5 39
SA253809AB8n2_Ac10L_3_TP6iAB8n2 10L TP5 39
SA253810AB8n2_Ac10_1_TP4iAB8n2 10 TP3 23
SA253811AB8n2_Ac10_2_TP4iAB8n2 10 TP3 23
SA253812AB8n2_Ac10_3_TP4iAB8n2 10 TP3 23
SA253813AB8n2_Ac10_1_TP6iAB8n2 10 TP5 39
SA253814AB8n2_Ac10_2_TP6iAB8n2 10 TP5 39
SA253815AB8n2_Ac10_3_TP6iAB8n2 10 TP5 39
SA253816AB8n2_Ac1L_1_TP4iAB8n2 1L TP3 23
SA253817AB8n2_Ac1L_3_TP4iAB8n2 1L TP3 23
SA253818AB8n2_Ac1L_2_TP4iAB8n2 1L TP3 23
SA253819AB8n2_Ac1L_1_TP6iAB8n2 1L TP5 39
SA253820AB8n2_Ac1L_2_TP6iAB8n2 1L TP5 39
SA253821AB8n2_Ac1L_3_TP6iAB8n2 1L TP5 39
SA253822AB8n2_Ac1_1_TP4iAB8n2 1 TP3 23
SA253823AB8n2_Ac1_3_TP4iAB8n2 1 TP3 23
SA253824AB8n2_Ac1_2_TP4iAB8n2 1 TP3 23
SA253825AB8n2_Ac1_1_TP6iAB8n2 1 TP5 39
SA253826AB8n2_Ac1_2_TP6iAB8n2 1 TP5 39
SA253827AB8n2_Ac1_3_TP6iAB8n2 1 TP5 39
SA253755Intra_BK_6- - - -
SA253756Intra_BK_7- - - -
SA253757Intra_BK_5- - - -
SA253758Intra_BK_4- - - -
SA253759Intra_BK_3- - - -
SA253760Intra_BK_8- - - -
SA253761Intra_BK_9- - - -
SA253762Intra_pool_4- - - -
SA253763Intra_pool_3- - - -
SA253764Intra_pool_2- - - -
SA253765Intra_pool_1- - - -
SA253766Intra_BK_1- - - -
SA253767Intra_BK_2- - - -
SA253858c_Ac0_2_TP4ic 0 TP3 23
SA253859c_Ac0_1_TP4ic 0 TP3 23
SA253860c_Ac0_2_TP6ic 0 TP5 39
SA253861c_Ac0_1_TP6ic 0 TP5 39
SA253862c_Ac10L_1_TP4ic 10L TP3 23
SA253863c_Ac10L_2_TP4ic 10L TP3 23
SA253864c_Ac10L_2_TP6ic 10L TP5 39
SA253865c_Ac10L_1_TP6ic 10L TP5 39
SA253866c_Ac10_2_TP4ic 10 TP3 23
SA253867c_Ac10_1_TP4ic 10 TP3 23
SA253868c_Ac10_1_TP6ic 10 TP5 39
SA253869c_Ac10_2_TP6ic 10 TP5 39
SA253870c_Ac1L_2_TP4ic 1L TP3 23
SA253871c_Ac1L_1_TP4ic 1L TP3 23
SA253872c_Ac1L_2_TP6ic 1L TP5 39
SA253873c_Ac1L_1_TP6ic 1L TP5 39
SA253874c_Ac1_1_TP4ic 1 TP3 23
SA253875c_Ac1_2_TP4ic 1 TP3 23
SA253876c_Ac1_1_TP6ic 1 TP5 39
SA253877c_Ac1_2_TP6ic 1 TP5 39
SA253828Valencia_Ac0_3_TP4iValencia 0 TP3 23
SA253829Valencia_Ac0_1_TP4iValencia 0 TP3 23
SA253830Valencia_Ac0_2_TP4iValencia 0 TP3 23
SA253831Valencia_Ac0_1_TP6iValencia 0 TP5 39
SA253832Valencia_Ac0_3_TP6iValencia 0 TP5 39
SA253833Valencia_Ac0_2_TP6iValencia 0 TP5 39
SA253834Valencia_Ac10L_3_TP4iValencia 10L TP3 23
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