Summary of Study ST002571

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001658. The data can be accessed directly via it's Project DOI: 10.21228/M8CX2C This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

Perform statistical analysis  |  Show all samples  |  Show named metabolites  |  Download named metabolite data  
Download mwTab file (text)   |  Download mwTab file(JSON)   |  Download data files (Contains raw data)
Study IDST002571
Study TitleQuantification of cytokinins in ap1 cal AP1-GR and drmy1 ap1 cal AP1-GR inflorescences using LC-MS
Study TypeQuantification using mass spectrometry
Study SummaryRobustness is the invariant development of phenotype despite environmental changes and genetic perturbations. In the Arabidopsis flower bud, four sepals initiate at robust positions and times and grow to equal size to enclose and protect the inner floral organs. We previously characterized the mutant development related myb-like1 (drmy1), where 3-5 sepals initiate at irregular positions and variable times and grow to different sizes, compromising their protective function. This loss of robustness was caused by a uniform increase in cytokinin signaling, as revealed by the TCS::GFP reporter, in the floral meristem before sepal initiation. We hypothesized that the increase in cytokinin signaling in drmy1 was due to an increase in the level of cytokinins. To test this idea, we extracted cytokinins from induced inflorescences of wild-type (5 bio-reps) and drmy1 (6 bio-reps) in ap1 cal AP1-GR background. We measured the level of three cytokinin bases, trans-Zeatin (tZ), cis-Zeatin (cZ), and isopentenyladenine (iP), and their corresponding nucleosides (tZR, cZR, and iPR), using liquid chromatography-mass spectrometry. We found that there was no statistically significant differences in cytokinin levels between these genotypes, indicating that the increase in cytokinin signaling in the drmy1 floral meristem is not due to increased cytokinin levels.
Institute
Cornell University
DepartmentPlant Biology Section
LaboratoryRoeder Lab
Last NameKong
First NameShuyao
Address239 Weill Hall, 526 Campus Road, Ithaca, NY 14853
Emailsk3245@cornell.edu
Phone6072629684
Submit Date2023-04-20
Num Groups2
Total Subjects11
Raw Data AvailableYes
Raw Data File Type(s)raw(Thermo)
Analysis Type DetailLC-MS
Release Date2023-05-11
Release Version1
Shuyao Kong Shuyao Kong
https://dx.doi.org/10.21228/M8CX2C
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Factors:

Subject type: Plant; Subject species: Arabidopsis thaliana (Factor headings shown in green)

mb_sample_id local_sample_id Genotype
SA258348ap1calAP1GR_cytokinins_1ap1calAP1GR
SA258349ap1calAP1GR_cytokinins_5ap1calAP1GR
SA258350ap1calAP1GR_cytokinins_4ap1calAP1GR
SA258351ap1calAP1GR_cytokinins_2ap1calAP1GR
SA258352ap1calAP1GR_cytokinins_3ap1calAP1GR
SA258353drmy1ap1calAP1GR_cytokinins_6drmy1ap1calAP1-GR
SA258354drmy1ap1calAP1GR_cytokinins_5drmy1ap1calAP1-GR
SA258355drmy1ap1calAP1GR_cytokinins_1drmy1ap1calAP1-GR
SA258356drmy1ap1calAP1GR_cytokinins_2drmy1ap1calAP1-GR
SA258357drmy1ap1calAP1GR_cytokinins_3drmy1ap1calAP1-GR
SA258358drmy1ap1calAP1GR_cytokinins_4drmy1ap1calAP1-GR
Showing results 1 to 11 of 11
  logo