Summary of Study ST002778
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001733. The data can be accessed directly via it's Project DOI: 10.21228/M8PX3J This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST002778 |
| Study Title | Cell Lineage-Guided Microanalytical Mass Spectrometry Reveals Increased Energy Metabolism and Reactive Oxygen Species in the Vertebrate Organizer |
| Study Summary | We performed targeted metabolomic analysis on the Spemann-Mangold Organizer (SMO) tissue in the frog (Xenopus laevis) and the remainder of dissected embryos (RE). Metabolites were extracted from the dissected tissues, reconstituted, and analyzed using liquid chromatography (LC) electrospray ionization (ESI) mass spectrometry (MS). The targeted metabolite measurements were performed on a trapped ion mobility time-of-flight mass spectrometer (timsTOF PRO, Bruker). |
| Institute | University of Maryland |
| Department | Chemistry & Biochemistry |
| Last Name | Nemes |
| First Name | Peter |
| Address | 8051 Regents Drive, College Park, MD 20742, USA |
| nemes@umd.edu | |
| Phone | 3014050373 |
| Submit Date | 2023-07-03 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | d |
| Analysis Type Detail | LC-MS |
| Release Date | 2024-01-10 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Amphibian; Subject species: Xenopus laevis (Factor headings shown in green)
| mb_sample_id | local_sample_id | Sample type |
|---|---|---|
| SA297322 | 2021-01-31 JL12 SO WE 2 MRM TR1_1-E | RE |
| SA297323 | 2021-09-10 JL54 SO1 3x dilution GSH GSSG MRM TR3_1-B | RE |
| SA297324 | 2021-01-31 JL06 SO WE 1 MRM TR2_1-E | RE |
| SA297325 | 2021-01-31 JL13 SO WE 2 MRM TR2_1-E | RE |
| SA297326 | 2021-01-31 JL07 SO WE 1 MRM TR3_1-E | RE |
| SA297327 | 2021-01-31 JL14 SO WE 2 MRM TR3_1-E | RE |
| SA297328 | 2021-01-31 JL19 SO WE 3 MRM TR1_1-E | RE |
| SA297329 | 2021-09-10 JL52 SO1 3x dilution GSH GSSG MRM TR1_1-B | RE |
| SA297330 | 2021-09-10 JL53 SO1 3x dilution GSH GSSG MRM TR2_1-B | RE |
| SA297331 | 2021-01-31 JL05 SO WE 1 MRM TR1_1-E | RE |
| SA297332 | 2021-09-10 JL60 SO2 3x dilution GSH GSSG MRM TR1_1-B | RE |
| SA297333 | 2021-02-01 JL55 SO WE 8 MRM LM TR2_1-E | RE |
| SA297334 | 2021-02-01 JL54 SO WE 8 MRM LM TR1_1-E | RE |
| SA297335 | 2021-09-10 JL68 SO3 3x dilution GSH GSSG MRM TR1_1-B | RE |
| SA297336 | 2021-09-10 JL62 SO2 3x dilution GSH GSSG MRM TR3_1-B | RE |
| SA297337 | 2021-02-01 JL61 SO WE 9 MRM LM TR1_1-F | RE |
| SA297338 | 2021-09-10 JL61 SO2 3x dilution GSH GSSG MRM TR2_1-B | RE |
| SA297339 | 2021-02-01 JL63 SO WE 9 MRM LM TR3_1-F | RE |
| SA297340 | 2021-02-01 JL62 SO WE 9 MRM LM TR2_1-F | RE |
| SA297341 | 2021-01-31 JL20 SO WE 3 MRM TR2_1-E | RE |
| SA297342 | 2021-01-31 JL21 SO WE 3 MRM TR3_1-E | RE |
| SA297343 | 2021-01-31 JL42 SO WE 6 MRM TR3_1-E | RE |
| SA297344 | 2021-01-31 JL41 SO WE 6 MRM TR2_1-E | RE |
| SA297345 | 2021-01-31 JL40 SO WE 6 MRM TR1_1-E | RE |
| SA297346 | 2021-01-31 JL55 SO WE 8 MRM TR2_1-E | RE |
| SA297347 | 2021-01-31 JL54 SO WE 8 MRM TR1_1-E | RE |
| SA297348 | 2021-01-31 JL49 SO WE 7 MRM TR3_1-E | RE |
| SA297349 | 2021-01-31 JL48 SO WE 7 MRM TR2_1-E | RE |
| SA297350 | 2021-01-31 JL47 SO WE 7 MRM TR1_1-E | RE |
| SA297351 | 2021-01-31 JL56 SO WE 8 MRM TR3_1-E | RE |
| SA297352 | 2021-01-31 JL35 SO WE 5 MRM TR3_1-E | RE |
| SA297353 | 2021-01-31 JL27 SO WE 4 MRM TR2_1-E | RE |
| SA297354 | 2021-01-31 JL26 SO WE 4 MRM TR1_1-E | RE |
| SA297355 | 2021-01-31 JL63 SO WE 9 MRM TR3_1-F | RE |
| SA297356 | 2021-01-31 JL28 SO WE 4 MRM TR3_1-E | RE |
| SA297357 | 2021-01-31 JL62 SO WE 9 MRM TR2_1-F | RE |
| SA297358 | 2021-01-31 JL34 SO WE 5 MRM TR2_1-E | RE |
| SA297359 | 2021-01-31 JL33 SO WE 5 MRM TR1_1-E | RE |
| SA297360 | 2021-01-31 JL61 SO WE 9 MRM TR1_1-F | RE |
| SA297361 | 2021-09-10 JL69 SO3 3x dilution GSH GSSG MRM TR2_1-B | RE |
| SA297362 | 2021-02-01 JL56 SO WE 8 MRM LM TR3_1-E | RE |
| SA297363 | 2021-02-01 JL28 SO WE 4 MRM LM TR3_1-E | RE |
| SA297364 | 2021-02-01 JL49 SO WE 7 MRM LM TR3_1-E | RE |
| SA297365 | 2021-02-01 JL27 SO WE 4 MRM LM TR2_1-E | RE |
| SA297366 | 2021-09-10 JL78 SO4 3x dilution GSH GSSG MRM TR3_1-B | RE |
| SA297367 | 2021-02-01 JL33 SO WE 5 MRM LM TR1_1-E | RE |
| SA297368 | 2021-02-01 JL13 SO WE 2 MRM LM TR2_1-E | RE |
| SA297369 | 2021-02-01 JL34 SO WE 5 MRM LM TR2_1-E | RE |
| SA297370 | 2021-02-01 JL26 SO WE 4 MRM LM TR1_1-E | RE |
| SA297371 | 2021-02-01 JL14 SO WE 2 MRM LM TR3_1-E | RE |
| SA297372 | 2021-02-01 JL19 SO WE 3 MRM LM TR1_1-E | RE |
| SA297373 | 2021-09-10 JL86 SO5 3x dilution GSH GSSG MRM TR3_1-C | RE |
| SA297374 | 2021-02-01 JL20 SO WE 3 MRM LM TR2_1-E | RE |
| SA297375 | 2021-02-01 JL21 SO WE 3 MRM LM TR3_1-E | RE |
| SA297376 | 2021-09-10 JL84 SO5 3x dilution GSH GSSG MRM TR1_1-C | RE |
| SA297377 | 2021-09-10 JL85 SO5 3x dilution GSH GSSG MRM TR2_1-C | RE |
| SA297378 | 2021-02-01 JL35 SO WE 5 MRM LM TR3_1-E | RE |
| SA297379 | 2021-02-01 JL12 SO WE 2 MRM LM TR1_1-E | RE |
| SA297380 | 2021-02-01 JL06 SO WE 1 MRM LM TR2_1-E | RE |
| SA297381 | 2021-02-01 JL07 SO WE 1 MRM LM TR3_1-E | RE |
| SA297382 | 2021-09-10 JL77 SO4 3x dilution GSH GSSG MRM TR2_1-B | RE |
| SA297383 | 2021-02-01 JL05 SO WE 1 MRM LM TR1_1-E | RE |
| SA297384 | 2021-09-10 JL70 SO3 3x dilution GSH GSSG MRM TR3_1-B | RE |
| SA297385 | 2021-02-01 JL48 SO WE 7 MRM LM TR2_1-E | RE |
| SA297386 | 2021-09-10 JL94 SO6 3x dilution GSH GSSG MRM TR3_1-C | RE |
| SA297387 | 2021-02-01 JL47 SO WE 7 MRM LM TR1_1-E | RE |
| SA297388 | 2021-02-01 JL42 SO WE 6 MRM LM TR3_1-E | RE |
| SA297389 | 2021-09-10 JL93 SO6 3x dilution GSH GSSG MRM TR2_1-C | RE |
| SA297390 | 2021-02-01 JL41 SO WE 6 MRM LM TR2_1-E | RE |
| SA297391 | 2021-09-10 JL92 SO6 3x dilution GSH GSSG MRM TR1_1-C | RE |
| SA297392 | 2021-09-10 JL76 SO4 3x dilution GSH GSSG MRM TR1_1-B | RE |
| SA297393 | 2021-02-01 JL40 SO WE 6 MRM LM TR1_1-E | RE |
| SA297394 | 2021-01-31 JL60 SO9 MRM TR3_1-D | SMO |
| SA297395 | 2021-09-10 JL90 SOWE6 3x dilution GSH GSSG MRM TR3_1-C | SMO |
| SA297396 | 2021-01-31 JL58 SO9 MRM TR1_1-D | SMO |
| SA297397 | 2021-01-31 JL59 SO9 MRM TR2_1-D | SMO |
| SA297398 | 2021-01-31 JL53 SO8 MRM TR3_1-C | SMO |
| SA297399 | 2021-09-10 JL89 SOWE6 3x dilution GSH GSSG MRM TR2_1-C | SMO |
| SA297400 | 2021-09-10 JL88 SOWE6 3x dilution GSH GSSG MRM TR1_1-C | SMO |
| SA297401 | 2021-09-10 JL50 SOWE1 3x dilution GSH GSSG MRM TR3_1-B | SMO |
| SA297402 | 2021-09-10 JL72 SOWE4 3x dilution GSH GSSG MRM TR1_1-B | SMO |
| SA297403 | 2021-09-10 JL73 SOWE4 3x dilution GSH GSSG MRM TR2_1-B | SMO |
| SA297404 | 2021-09-10 JL64 SOWE3 3x dilution GSH GSSG MRM TR1_1-B | SMO |
| SA297405 | 2021-09-10 JL65 SOWE3 3x dilution GSH GSSG MRM TR2_1-B | SMO |
| SA297406 | 2021-09-10 JL66 SOWE3 3x dilution GSH GSSG MRM TR3_1-B | SMO |
| SA297407 | 2021-01-31 JL52 SO8 MRM TR2_1-C | SMO |
| SA297408 | 2021-09-10 JL74 SOWE4 3x dilution GSH GSSG MRM TR3_1-B | SMO |
| SA297409 | 2021-09-10 JL58 SOWE2 3x dilution GSH GSSG MRM TR3_1-B | SMO |
| SA297410 | 2021-09-10 JL82 SOWE5 3x dilution GSH GSSG MRM TR3_1-C | SMO |
| SA297411 | 2021-09-10 JL49 SOWE1 3x dilution GSH GSSG MRM TR2_1-B | SMO |
| SA297412 | 2021-09-10 JL81 SOWE5 3x dilution GSH GSSG MRM TR2_1-C | SMO |
| SA297413 | 2021-09-10 JL80 SOWE5 3x dilution GSH GSSG MRM TR1_1-C | SMO |
| SA297414 | 2021-09-10 JL57 SOWE2 3x dilution GSH GSSG MRM TR2_1-B | SMO |
| SA297415 | 2021-09-10 JL56 SOWE2 3x dilution GSH GSSG MRM TR1_1-B | SMO |
| SA297416 | 2021-09-10 JL48 SOWE1 3x dilution GSH GSSG MRM TR1_1-B | SMO |
| SA297417 | 2021-01-31 JL23 SO4 MRM TR1_1-C | SMO |
| SA297418 | 2021-02-01 JL38 SO6 MRM LM TR2_1-C | SMO |
| SA297419 | 2021-02-01 JL39 SO6 MRM LM TR3_1-C | SMO |
| SA297420 | 2021-02-01 JL37 SO6 MRM LM TR1_1-C | SMO |
| SA297421 | 2021-02-01 JL32 SO5 MRM LM TR3_1-C | SMO |
