Summary of Study ST000515
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000384. The data can be accessed directly via it's Project DOI: 10.21228/M8DP41 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
Study ID | ST000515 |
Study Title | Metabolomics of longitudinal plasma samples from Macaca mulatta infected with Plasmodium cynomolgi B strain. |
Study Type | Longitudinal parasite infection and treatment of multiple individuals |
Study Summary | ATTENTION: The dataset package associated with this study is out of date. Please refer to https://www.ebi.ac.uk/metabolights/MTBLS517 for the latest and final version of all files. Malaria-naive male rhesus macaques (Macaca mulatta), approximately three years of age, were inoculated intravenously with salivary gland sporozoites isolated at the Centers for Disease Control and Prevention from multiple Anopheles species (An. dirus, An. gambiae, and An. stephensi) and then profiled for parasitological, clinical, immunological, functional genomic, lipidomic, proteomic, and metabolomic measurements. The experiment was designed for 100 days, and pre- and post-100 day periods to prepare subjects and administer curative treatments respectively. The anti-malarial drug Artemether was subcuratively administered selectively to several subjects during the primary parasitemia to suppress clinical complications and to all animals for curative treatment of blood-stage infections to allow detection of relapses. One subject was euthanized during the 100-day experimental period due to clinical complications. The anti-malarial drugs Primaquine and Chloroquine were administered to all remaining subjects at the end of the study for curative treatment of the liver and blood-stage infections, respectively. Plasma samples were acquired every other day from capillary blood and during seven-time point collections of venous blood. Supplemental files, including a ReadMe with additional experimental details, all raw data, and analytical metadata, are provided as part of this submission. |
Institute | Emory University |
Department | School of Medicine, Vaccine Center at Yerkes |
Last Name | Galinski |
First Name | Mary |
Address | Emory University, 954 Gatewood Rd, Atlanta, GA 30329 |
mahpic@emory.edu | |
Phone | N/A |
Submit Date | 2016-11-23 |
Total Subjects | 5 |
Study Comments | Malaria Host Pathogen Interaction Center Experiment 04, 5 subjects 286 samples. The experimental design and protocols for this study were approved by the Emory University Institutional Animal Care and Use Committee (IACUC). These results are a product of a consortium of researchers known as the Malaria Host Pathogen Interaction Center (MaHPIC). For more information on the MaHPIC, please visit http://www.systemsbiology.emory.edu/ . Within the MaHPIC, these data were collected as part of 'Experiment 04' (E04). To access other publicly available results from E04 and other MaHPIC Experiments, including clinical results (specifics on drugs administered, diet, and veterinary interventions), and other omics, visit http://plasmodb.org/plasmo/mahpic.jsp . This page will be updated as datasets are released to the public. |
Raw Data Available | Yes |
Raw Data File Type(s) | raw(Thermo) |
Analysis Type Detail | LC-MS |
Release Date | 2017-07-10 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Combined analysis:
Analysis ID | AN000788 | AN000789 |
---|---|---|
Analysis type | MS | MS |
Chromatography type | Reversed phase | Reversed phase |
Chromatography system | Thermo QExactive | Thermo QExactive |
Column | Higgins C18 (100 x 2.1mm,5um) | Higgins C18 (100 x 2.1mm,5um) |
MS Type | ESI | ESI |
MS instrument type | Orbitrap | Orbitrap |
MS instrument name | Thermo Q Exactive Orbitrap | Thermo Q Exactive Orbitrap |
Ion Mode | POSITIVE | NEGATIVE |
Units | peak intensity | peak intensity |
MS:
MS ID: | MS000695 |
Analysis ID: | AN000788 |
Instrument Name: | Thermo Q Exactive Orbitrap |
Instrument Type: | Orbitrap |
MS Type: | ESI |
Ion Mode: | POSITIVE |
Capillary Temperature: | 250 |
Capillary Voltage: | 4.45 |
Collision Gas: | N2 |
Gas Pressure: | 50 PSI |
Ionization: | electrospray ionization |
Mass Accuracy: | 5 PPM |
Source Temperature: | 48 |
Spray Voltage: | 3.5 |
Atom Gun Current: | 1000000 |
Dataformat: | .raw,.cdf |
Probe Tip: | HESI |
Resolution Setting: | 120,000 |
Scan Range Moverz: | 85-1275 |
Analysis Protocol File: | Metabolomics_Core_Data_Analysis.docx |
MS ID: | MS000696 |
Analysis ID: | AN000789 |
Instrument Name: | Thermo Q Exactive Orbitrap |
Instrument Type: | Orbitrap |
MS Type: | ESI |
Ion Mode: | NEGATIVE |
Capillary Temperature: | 250 |
Capillary Voltage: | 4.45 |
Collision Gas: | N2 |
Gas Pressure: | 50 PSI |
Ionization: | electrospray ionization |
Mass Accuracy: | 5 PPM |
Source Temperature: | 48 |
Spray Voltage: | 3.5 |
Atom Gun Current: | 1000000 |
Dataformat: | .raw,.cdf |
Probe Tip: | HESI |
Resolution Setting: | 120,000 |
Scan Range Moverz: | 85-1275 |
Analysis Protocol File: | Metabolomics_Core_Data_Analysis.docx |