Summary of Study ST001283

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench,, where it has been assigned Project ID PR000867. The data can be accessed directly via it's Project DOI: 10.21228/M8MM6Z This work is supported by NIH grant, U2C- DK119886.


This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST001283
Study TitleNitric Oxide (NO) effect on mitochondrial metabolic rewiring in M1 Macrophages
Study SummaryStudy of Metabolome of WT and Nos2 KO Bone Marrow Derived Macrophages in resting state or activated for 24h with LPS
National Cancer Institute
Last NamePalmieri
First NameErika M
Address1050 Boyles street, Frederick MD 21702
Submit Date2019-11-22
Raw Data AvailableYes
Raw Data File Type(s)cdf
Analysis Type DetailGC-MS
Release Date2019-11-27
Release Version1
Erika M Palmieri Erika M Palmieri application/zip

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Combined analysis:

Analysis ID AN002127
Analysis type MS
Chromatography type GC
Chromatography system Agilent 6890N
Column Restek Rtx-5Sil (30m x 0.25mm,0.25um)
MS Type EI
MS instrument type GC-TOF
MS instrument name Leco Pegasus III GC TOF
Units normalized peak height


MS ID:MS001981
Analysis ID:AN002127
Instrument Name:Leco Pegasus III GC TOF
Instrument Type:GC-TOF
MS Type:EI
MS Comments:Raw GC-TOF MS data files were preprocessed directly after data acquisition and stored as ChromaTOF-specific peg files, as generic txt result files and additionally as generic ANDI MS cdf files. ChromaTOF version 4.0 was used for data preprocessing without smoothing, 3 s peak width, baseline subtraction just above the noise level, and automatic mass spectral deconvolution and peak detection at signal/noise (s/n) levels of 5:1 throughout the chromatogram. Results in .txt format were exported to a data server with absolute spectra intensities and further processed by a filtering algorithm implemented in the metabolomics BinBase database. The BinBase algorithm (rtx5) used the following settings: validity of chromatogram (107 counts/s), unbiased retention index marker detection (MS similarity > 800, validity of intensity range for high m/z