Summary of study ST000158

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000137. The data can be accessed directly via it's Project DOI: 10.21228/M8859H This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

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Study IDST000158
Study TitleHuman fecal bile acid profiles before and after fecal transplant
Study SummaryUnderstand the bile acid profiles from the feces of fecal microbiota transplant FMT patients that successfully recover from recurrent C. difficile infection. The assay is intended to generate the profile of central metabolism, including glycolysis, pentose-phosphate shunt, TCA cycle and nucleotide pools.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Email mkachman@umich.edu
Submit Date2014-12-03
Num Groups8
Total Subjects46
Raw Data AvailableYes
Raw Data File Type(s).xml,.xsd,.bin, .cd,.cG, .m
Uploaded File Size444 M
Analysis Type DetailLC-MS
Release Date2016-06-18
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8859H
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Project:

Project ID:PR000137
Project DOI:doi: 10.21228/M8859H
Project Title:Fecal Transplant Studies
Project Summary:Alterations in fecal bile acids before and after fecal transplant
Institute:University of Michigan
Department:Int Med-Infectious Diseases
Laboratory:Theriot Lab
Last Name:Theriot
First Name:Casey
Address:Ann Arbor, MI
Email:caseythe@umich.edu
Phone:734-763-4133

Subject:

Subject ID:SU000177
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Human

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Patient
SA008501S00016909donor
SA008502S00016913donor
SA008503S00016911donor
SA008504S00016897donor homogenized
SA008505S00016890donor homogenized
SA008506S00016905donor homogenized
SA008507S00016882donor homogenized
SA008508S00016883donor non-homogenized
SA008509S00016898donor non-homogenized
SA008510S00016906donor non-homogenized
SA008511S00016891donor non-homogenized
SA008512S00016934dudenum
SA008513S00016933dudenum
SA008514S00016932dudenum
SA008515S00016935dudenum
SA008516S00016936jejunum
SA008517S00016912post-FMT
SA008518S00016914post-FMT
SA008519S00016902post-FMT
SA008520S00016910post-FMT
SA008521S00016904post-FMT
SA008522S00016915post-FMT
SA008523S00016901post-FMT
SA008524S00016903post-FMT
SA008525S00016894post-FMT
SA008526S00016881post-FMT
SA008527S00016880post-FMT
SA008528S00016879post-FMT
SA008529S00016896post-FMT
SA008530S00016886post-FMT
SA008531S00016895post-FMT
SA008532S00016889post-FMT
SA008533S00016888post-FMT
SA008534S00016887post-FMT
SA008535S00016938pre-FMT
SA008536S00016937pre-FMT
SA008537S00016899pre-FMT
SA008538S00016885pre-FMT
SA008539S00016884pre-FMT
SA008540S00016878pre-FMT
SA008541S00016892pre-FMT
SA008542S00016893pre-FMT
SA008543S00016907pre-FMT
SA008544S00016900pre-FMT
SA008545S00016877pre-FMT
SA008546S00016908pre-FMT
Showing results 1 to 46 of 46

Collection:

Collection ID:CO000163
Sample Type:Serum

Treatment:

Treatment ID:TR000183

Sample Preparation:

Sampleprep ID:SP000177
Sampleprep Protocol Filename:Bile-acids-2015-03-11.docx

Combined analysis:

Analysis ID AN000250
Analysis type MS
Chromatography type Reversed phase
Chromatography system Agilent 1260
Column Waters Acquity BEH C18 (50 x 2mm, 1.7um)
MS Type ESI
MS instrument type QTOF
MS instrument name Agilent 6520 QTOF
Ion Mode NEGATIVE
Units mg/100mg (fecal), and mg/ml (serum, duodenum)

Chromatography:

Chromatography ID:CH000175
Methods ID:AQM030
Methods Filename:2014-07-30-Bile_acid-full-BEH-C18-I_insert.m.zip
Instrument Name:Agilent 1260
Column Name:Waters Acquity BEH C18 (50 x 2mm, 1.7um)
Chromatography Type:Reversed phase

MS:

MS ID:MS000200
Analysis ID:AN000250
Instrument Name:Agilent 6520 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:NEGATIVE
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