Summary of study ST000711

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000508. The data can be accessed directly via it's Project DOI: 10.21228/M80M4M This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

Perform statistical analysis  |  Show all samples  |  Show named metabolites  |  Download named metabolite data  |  Download all metabolite data  |  Perform analysis on untargeted data  |  Download mwTab file (text)   |  Download mwTab file(JSON)   |  Download data (Contains raw data)
Study IDST000711
Study TitleMicrobial ecology of nontuberculous mycobacteria (NTM) in cystic fibrosis (CF) sputum
Study TypeMS analysis
Study SummaryThese are sputum samples collected from 8 individuals with cystic fibrosis during the course of routine clinical care. They were initially stored at 4C for up to 24 hours then stored at -80C. No processing has been done to the sputum prior to freezing. For each individual there are sputum samples collected both before and after the individual had his or her first positive sputum culture for nontuberculous mycobacteria (NTM). The individuals experienced different clinical courses after their infection.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2017-06-19
Num Groups2
Total Subjects8
Raw Data AvailableYes
Raw Data File Type(s).d
Analysis Type DetailLC-MS
Release Date2017-12-06
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M80M4M
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:


Project:

Project ID:PR000508
Project DOI:doi: 10.21228/M80M4M
Project Title:NTM microbial ecology
Project Type:MS analysis
Project Summary:Microbial ecology of NTM in CF sputum
Institute:University of Michigan
Department:Pediatrics
Laboratory:Caverly Lab
Last Name:Caverly
First Name:Lindsay
Address:Ann Arbor, MI
Email:caverlyl@med.umich.edu
Phone:303-587-1406

Subject:

Subject ID:SU000734
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Human

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id M. abscessus NTM pulmonary disease pre-infection sample
SA040056S00022364no no no
SA040057S00022366no no no
SA040058S00022363no no yes
SA040059S00022365no no yes
SA040060S00022356no yes no
SA040061S00022368no yes no
SA040062S00022353no yes no
SA040063S00022357no yes no
SA040064S00022348no yes no
SA040065S00022350no yes no
SA040066S00022354no yes yes
SA040067S00022351no yes yes
SA040068S00022367no yes yes
SA040069S00022347no yes yes
SA040070S00022355no yes yes
SA040071S00022352no yes yes
SA040072S00022345no yes yes
SA040073S00022346no yes yes
SA040074S00022349no yes yes
SA040075S00022361yes yes no
SA040076S00022362yes yes no
SA040077S00022358yes yes yes
SA040078S00022360yes yes yes
SA040079S00022359yes yes yes
Showing results 1 to 24 of 24

Collection:

Collection ID:CO000728
Collection Summary:-
Sample Type:Sputum

Treatment:

Treatment ID:TR000748
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP000741
Sampleprep Summary:-
Sampleprep Protocol Filename:A003_-_Untargeted_Metabolomics.pdf

Combined analysis:

Analysis ID AN001110 AN001111
Analysis type MS MS
Chromatography type Reversed phase Reversed phase
Chromatography system Agilent Agilent
Column Waters Acquity HSS T3 (50 x 2.1mm, 1.8um) Waters Acquity HSS T3 (50 x 2.1mm, 1.8um)
MS Type ESI ESI
MS instrument type QTOF QTOF
MS instrument name Agilent 6530 QTOF Agilent 6530 QTOF
Ion Mode NEGATIVE POSITIVE
Units peak area peak area normalized

Chromatography:

Chromatography ID:CH000780
Instrument Name:Agilent
Column Name:Waters Acquity HSS T3 (50 x 2.1mm, 1.8um)
Chromatography Type:Reversed phase

MS:

MS ID:MS001005
Analysis ID:AN001110
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:NEGATIVE
  
MS ID:MS001006
Analysis ID:AN001111
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:POSITIVE
  logo