| Species: |
| Species | Studies |
|---|---|
| Human | 1607 |
| Mouse | 1268 |
| Rat | 234 |
| Escherichia coli | 46 |
| Plasmodium falciparum | 41 |
| Arabidopsis thaliana | 25 |
| C. elegans | 23 |
| Saccharomyces cerevisiae | 23 |
| Zebrafish | 22 |
| Bacteria | 19 |
| Cow | 18 |
| Fruit fly | 17 |
| M. tuberculosis | 17 |
| Pig | 17 |
| Sheep | 16 |
| Rhesus monkey | 13 |
| Dog | 12 |
| Frog | 11 |
| Maize | 11 |
| Staphylococcus aureus | 10 |
| Bacteroides thetaiotaomicron | 9 |
| Honey bee | 9 |
| Soybean | 9 |
| Synechococcus | 9 |
| Eggerthella lenta | 8 |
| Chicken | 7 |
| Golden hamster | 7 |
| Synthetic | 7 |
| Chacrona | 6 |
| Enterococcus faecium | 6 |
| Fungi | 6 |
| Goat | 6 |
| Insect | 6 |
| Parasite | 6 |
| Rainbow trout | 6 |
| Rice | 6 |
| Synechococcus elongatus | 6 |
| Thalassiosira pseudonana | 6 |
| Barley | 5 |
| Chlamydomonas reinhardtii | 5 |
| Enterococcus faecalis | 5 |
| Holly oak | 5 |
| Horse | 5 |
| Phytoplankton | 5 |
| Pseudomonas aeruginosa | 5 |
| Salmonella enterica | 5 |
| Wuchang bream | 5 |
| Algae | 4 |
| Bacillus subtilis | 4 |
| Bacteroides uniformis | 4 |
| Candida albicans | 4 |
| Catshark | 4 |
| Chinook salmon | 4 |
| Coho salmon | 4 |
| Date palm | 4 |
| Dungeness crab | 4 |
| Fusobacterium nucleatum | 4 |
| Marine microbes | 4 |
| Rabbit | 4 |
| Staphylococcus epidermidis | 4 |
| Thermococcus kodakarensis | 4 |
| Tomato | 4 |
| Toxoplasma gondii | 4 |
| Trypanosoma brucei | 4 |
| Acropora cervicornis | 3 |
| Alexandrium minutum | 3 |
| Alexandrium tamarense | 3 |
| Apple | 3 |
| Baboon | 3 |
| Bacteroides fragilis | 3 |
| Blautia producta | 3 |
| Cat | 3 |
| Clostridium clostridioforme | 3 |
| Clostridium hathewayi | 3 |
| Clostridium hylemonae | 3 |
| Clostridium scindens | 3 |
| Clostridium symbiosum | 3 |
| Enterococcus hirae | 3 |
| Escherichia fergusonii | 3 |
| Flavonifractor plautii | 3 |
| Hooded seal | 3 |
| Little brown bat | 3 |
| Macaque monkey | 3 |
| Other abiotic sample | 3 |
| Parabacteroides distasonis | 3 |
| Rapeseed | 3 |
| Wheat | 3 |
| Abiotic | 2 |
| Acinetobacter baumannii | 2 |
| Alexandrium catenella | 2 |
| Artemisia argyi | 2 |
| Athorix | 2 |
| Aurantiochytrium limacinum | 2 |
| Auxenochlorella | 2 |
| Bacillus megaterium | 2 |
| Basil | 2 |
| Bumble Bee | 2 |
| Cabbage | 2 |
| Cattle | 2 |
| Coral | 2 |
| Faecalibacterium prausnitzii | 2 |
| Flame Bromeliad | 2 |
| Garlic | 2 |
| Giant Panda | 2 |
| Heart-leaved poison | 2 |
| Ilyonectria estremocensis | 2 |
| Ilyonectria mors-panacis | 2 |
| Ilyonectria robusta | 2 |
| Ilyonectria rufa | 2 |
| Ilyonectria torresensis | 2 |
| Lettuce | 2 |
| Marmoset | 2 |
| Mayfly | 2 |
| Methanococcus maripaludis | 2 |
| Microbacterium sediminis | 2 |
| Microchloropsis gaditana | 2 |
| Mozambique tilapia | 2 |
| Neonectria obtusispora | 2 |
| Nitzschia lecointei | 2 |
| Oat | 2 |
| Oil palm | 2 |
| Onion | 2 |
| Other | 2 |
| Pine | 2 |
| Plants | 2 |
| Porphyromonas gingivalis | 2 |
| Rothia | 2 |
| Rubber tree | 2 |
| Seal | 2 |
| Silkworm | 2 |
| Sinorhizobium | 2 |
| Strawberry | 2 |
| Streptococcus | 2 |
| Streptococcus mutans | 2 |
| Streptococcus pyogenes | 2 |
| Sulfolobus acidocaldarius | 2 |
| Sulfolobus islandicus | 2 |
| Thermococcus sp. AM4 | 2 |
| Veillonella parvula | 2 |
| Vibrio cholerae | 2 |
| Vine | 2 |
| Western clawed frog | 2 |
| Acidithiobacillus | 1 |
| Acinetobacter | 1 |
| Actinobacteria | 1 |
| Alexandrium pacificum | 1 |
| Alkanet | 1 |
| Alpinaria cf. rhododendri | 1 |
| Alternaria alternata | 1 |
| Alternaria arborescens | 1 |
| Alternaria cf. alternata | 1 |
| Alternaria infectoria | 1 |
| Amphipods | 1 |
| Ant | 1 |
| Anthostomella sp. | 1 |
| Aposphaeria corallinolutea | 1 |
| Apple-pear hybrid | 1 |
| Arctic lamprey | 1 |
| Articulospora atra | 1 |
| Aspergillus amstelodami | 1 |
| Aspergillus niger | 1 |
| Aureobasidium cf. subglaciale | 1 |
| Bacillus cereus | 1 |
| Bacillus licheniformis | 1 |
| Bacillus pumilus | 1 |
| Bacteroides | 1 |
| Bacteroides ovatus | 1 |
| Banana | 1 |
| Barbatosphaeriaceae sp. | 1 |
| Beet | 1 |
| Bermudagrass | 1 |
| Bifidobacteria | 1 |
| Bifidobacterium | 1 |
| Bighorn sheep | 1 |
| Biofilm Microbial Community | 1 |
| Black flying fox fruit bat | 1 |
| Black mustard | 1 |
| Blood parasite | 1 |
| Botrytis cinerea | 1 |
| Brine shrimp | 1 |
| Brucella abortus | 1 |
| Camaropella sp. | 1 |
| Camelina | 1 |
| Candida auris | 1 |
| Capybara | 1 |
| Carrot | 1 |
| Casaresia cf. sphagnorum | 1 |
| Cassiopea andromeda | 1 |
| C. difficile | 1 |
| Centella asiatica | 1 |
| Chaetopsis sp. | 1 |
| Chickpea | 1 |
| Chili pepper | 1 |
| Chinese brake fern | 1 |
| Chinese hamster | 1 |
| Chlorella | 1 |
| Chromobacterium vaccinii | 1 |
| Chromobacterium violaceum | 1 |
| Civet | 1 |
| Cladosporium allicinum | 1 |
| Cladosporium cf. cladosporioides | 1 |
| Clam | 1 |
| Clostridium | 1 |
| Colletotrichum cf. truncatum | 1 |
| Colletotrichum fioriniae | 1 |
| Common bean | 1 |
| Common gromwell | 1 |
| Common prawn | 1 |
| Coniochaeta cf. marina | 1 |
| Coniothyrium ferrarisianum | 1 |
| Cordyceps | 1 |
| Cormus domestica | 1 |
| Corydalis yanhusuo | 1 |
| Corylus americana | 1 |
| Corylus avellana | 1 |
| Cowpea | 1 |
| Crayfish | 1 |
| Creosphaeria sassafras | 1 |
| Cryptococcus neoformans | 1 |
| Cryptosporella sp. | 1 |
| Cytospora cf. cedri | 1 |
| Cytospora ribis | 1 |
| Diaporthe phaseolorum | 1 |
| Diaporthe vaccinii | 1 |
| Didymella pomorum | 1 |
| Didymella sp. | 1 |
| Discosia rubi | 1 |
| Dolphin | 1 |
| Dorea longicatena | 1 |
| Dothideaceae sp. | 1 |
| Drosophila melanogaster | 1 |
| Echium vulgare | 1 |
| E. coli | 1 |
| Enterobacter sp. | 1 |
| Epicoccum nigrum | 1 |
| Epicoleosporium ramularioides | 1 |
| Equisetum arvense | 1 |
| Equisetum hyemale | 1 |
| Equisetum telmateia | 1 |
| European pepper moth | 1 |
| Exaiptasia diaphana | 1 |
| Exidia glandulosa | 1 |
| Flesh Fly | 1 |
| Florida manatee | 1 |
| Fly | 1 |
| Food item | 1 |
| Fragilariopsis cylindrus | 1 |
| Fusarium tricinctum | 1 |
| Gardenerella vaginalis | 1 |
| Geastrumia polystigmatis | 1 |
| Ginger | 1 |
| Ginkgo biloba | 1 |
| Ginseng | 1 |
| Gloeophyllum sepiarium | 1 |
| Glycyrrhiza glabra | 1 |
| Godronia cassandrae | 1 |
| Godronia cf. cassandrae | 1 |
| Grass | 1 |
| Green ash, Black ash, White ash | 1 |
| Guinea Grass | 1 |
| Habanero pepper | 1 |
| Haemophilus influenzae | 1 |
| Haloxylon salicornicum | 1 |
| Human, Mouse | 1 |
| Hyaloscyphaceae sp. | 1 |
| Hypoderma cf. rubi | 1 |
| Hypoxylon submonticulosum | 1 |
| Karenia brevis | 1 |
| Kretzschmaria hedjaroudei | 1 |
| Lachnellula calyciformis | 1 |
| Lachnum sp. | 1 |
| Lacticaseibacillus casei | 1 |
| Lacticaseibacillus rhamnosus | 1 |
| Lactobacillus | 1 |
| Lactobacillus crispatus | 1 |
| Lactobacillus iners | 1 |
| Lake water | 1 |
| Lentil | 1 |
| Lentilactobacillus kefiri | 1 |
| Leptodontidium sp. | 1 |
| Long pepper | 1 |
| Lophiotrema mucilaginosis | 1 |
| Loquat | 1 |
| Malassezia globosa | 1 |
| Malaysian red seaweed | 1 |
| Marine plankton | 1 |
| Maritime pine | 1 |
| Maryland blue crab | 1 |
| Media | 1 |
| Megachile rotundata | 1 |
| Microdochium neoqueenslandicum | 1 |
| Millet | 1 |
| Mollisia cf. melaleuca | 1 |
| Mollisia cf. nigrescens | 1 |
| Mollisia sp. | 1 |
| Mosquito | 1 |
| Moss | 1 |
| Mucidula mucida | 1 |
| Multiple bacterial species | 1 |
| Mus musculus | 1 |
| Mustard | 1 |
| Mycobacterium tuberculosis | 1 |
| Mycoplasma mycoides | 1 |
| Nannochloropsis | 1 |
| Navicula cf. perminuta | 1 |
| Navicula pelliculosa | 1 |
| Nemania diffusa | 1 |
| Nemania serpens | 1 |
| Nemania sp. | 1 |
| Neocucurbitaria sp. | 1 |
| Neodevriesiaceae sp. | 1 |
| Neovaginatispora sp. | 1 |
| Nigrospora sp. | 1 |
| Nigrospora sphaerica | 1 |
| Oak | 1 |
| Olive | 1 |
| Ophiocordyceps | 1 |
| Orange | 1 |
| Orange-spotted grouper | 1 |
| Pacific Abalone | 1 |
| Panax ginseng | 1 |
| Paramycosphaerella sp. | 1 |
| Paraphaeosphaeria neglecta | 1 |
| Peach | 1 |
| Pear | 1 |
| Pendant amaranth | 1 |
| Penicillium camponotum | 1 |
| Phaeoacremonium fraxinopennsylvanicum | 1 |
| Phaeodactylum tricornutum | 1 |
| Phaeodactylum tricornutum, Loktanella vestfoldensis | 1 |
| Phaeomoniellales sp. | 1 |
| Phialocephala sp. | 1 |
| Phyllosticta cf. pyrolae | 1 |
| Phyllosticta pyrolae | 1 |
| Phyllostictina vaccinii | 1 |
| Picochlorum celeri | 1 |
| Pico Synechococcus sp. | 1 |
| Pilidium concavum | 1 |
| Plagiostoma petiolophilum | 1 |
| Plankton | 1 |
| Plant | 1 |
| Plasmodium berghei | 1 |
| Pleosporales sp. | 1 |
| Poplar | 1 |
| Populus trichocarpa | 1 |
| Potato | 1 |
| Prochlorococcus marinus | 1 |
| Proliferodiscus sp. | 1 |
| Propionibacterium | 1 |
| Pseudoplectania nigrella | 1 |
| Purslane | 1 |
| Pyrenopeziza sp. | 1 |
| Ramularia sp. | 1 |
| Red algae | 1 |
| Red-striped killifish | 1 |
| Rhytismataceae sp. | 1 |
| Rickettsia parkeri | 1 |
| Roundworm | 1 |
| Rubrivivax benzoatilyticus | 1 |
| Ruegeria pomeroyi | 1 |
| Rumex patientia | 1 |
| Sage | 1 |
| Salmonella | 1 |
| Salmonella typhimurium | 1 |
| Sarea difformis | 1 |
| Scenedesmus obliquus | 1 |
| Seawater | 1 |
| Seimatosporium lichenicola | 1 |
| S. epidermidis | 1 |
| Setomelanomma holmii | 1 |
| Shrew | 1 |
| Sphaerulina vaccinii | 1 |
| Spinach | 1 |
| Squirrel | 1 |
| Stemphylium globuliferum | 1 |
| Stony corals, Stony corals, Stony corals | 1 |
| Stylophora pistillata | 1 |
| Sugarcane | 1 |
| Sugar Maple | 1 |
| Sweet potato | 1 |
| Swine colonic microbiota | 1 |
| Symbiodiniaceae | 1 |
| Tea plant | 1 |
| Thyronectria cucurbitula | 1 |
| Tobacco | 1 |
| Treponema | 1 |
| Trichaptum abietinum | 1 |
| Trichinella spiralis | 1 |
| Turbot fish | 1 |
| Turquoise killifish | 1 |
| Tympanidaceae sp. | 1 |
| Unknown | 1 |
| Venturia sp. | 1 |
| Water flea | 1 |
| White-footed mouse | 1 |
| Woody vine | 1 |
| Worm | 1 |
| Xylariaceae sp. | 1 |
| Xylaria corniformis | 1 |
| Xylaria ellisii | 1 |
| Xylaria sp. | 1 |
| Yew | 1 |
