Summary of Study ST002023

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001285. The data can be accessed directly via it's Project DOI: 10.21228/M8MD8N This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST002023
Study TitleA targeted metabolomics study for assessing rodent thyroid toxicity
Study SummaryThe thyroid gland regulates various physiological mechanisms in mammals/humans, such as individual development, cell proliferation and differentiation. Thus, disorders can lead to diseases. In this study, we aimed to apply targeted metabolomics approach to investigate rodent thyroid toxicity. For this purpose, male Wistar rats have been exposed to a direct (6-propyl-2-thiouracil, PTU) and an indirect (phenytoin) thyroid toxicant, respectively. Thereby, two doses (low:5ppm for PTU and 300ppm for phenytoin , high: 50ppm for PTU and 2400ppm for phenytoin) and three exposure time phase (short: 2 weeks, long:4 weeks, and long+recovery: 4weeks+2weeks) were investigated, allowing insights into the modes of action during thyroid toxicity. Targeted metabolomics were applied to both liver and thyroid gland tissue.
Institute
Helmholtz Centre for Environmental Research
DepartmentDepartment of Molecular Systems biology
LaboratoryFunctional Metabolomics
Last NameWang
First NameZhipeng
AddressPermoserstraße 15, Leipzig, Saxony, 04318, Germany
Emailzhipeng.wang@ufz.de
Phone+49 341 235 1078
Submit Date2021-12-20
Raw Data AvailableYes
Raw Data File Type(s)wiff
Analysis Type DetailLC-MS
Release Date2022-12-20
Release Version1
Zhipeng Wang Zhipeng Wang
https://dx.doi.org/10.21228/M8MD8N
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Project:

Project ID:PR001285
Project DOI:doi: 10.21228/M8MD8N
Project Title:A targeted metabolomics study for assessing rodent thyroid toxicity
Project Summary:The thyroid gland regulates various physiological mechanisms in mammals/humans, such as individual development, cell proliferation and differentiation. Thus, disorders can lead to diseases. In this study, we aimed to apply targeted metabolomics approach to investigate rodent thyroid toxicity. For this purpose, male Wistar rats have been exposed to a direct (6-propyl-2-thiouracil, PTU) and an indirect (phenytoin) thyroid toxicant, respectively. Thereby, two doses (low:5ppm for PTU and 300ppm for phenytoin , high: 50ppm for PTU and 2400ppm for phenytoin) and three exposure time phase (short: 2 weeks, long:4 weeks, and long+recovery: 4weeks+2weeks) were investigated, allowing insights into the modes of action during thyroid toxicity. Targeted metabolomics were applied to both liver and thyroid gland tissue.
Institute:Helmholtz Centre for Environmental Research GmbH
Department:Department of Molecular Systems biology
Laboratory:Functional Metabolomics
Last Name:Wang
First Name:Zhipeng
Address:Permoserstraße 15, Leipzig, Saxony, 04318, Germany
Email:zhipeng.wang@ufz.de
Phone:+49 341 235 1078

Subject:

Subject ID:SU002105
Subject Type:Mammal
Subject Species:Rattus norvegicus
Taxonomy ID:10116

Factors:

Subject type: Mammal; Subject species: Rattus norvegicus (Factor headings shown in green)

mb_sample_id local_sample_id Short sample name
SA189446L-A103-G11-ML103 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
SA189447L-A104-G11-ML104 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
SA189448L-A105-G11-ML105 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
SA189449L-A108-G11-ML108 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
SA189450L-A110-G11-ML110 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
SA189451L-A112-G12-ML112 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
SA189452L-A114-G12-ML114 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
SA189453L-A116-G12-ML116 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
SA189454L-A117-G12-ML117 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
SA189455L-A118-G12-ML118 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
SA189456L-A122-G13-ML122 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
SA189457L-A123-G13-ML123 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
SA189458L-A124-G13-ML124 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
SA189459L-A127-G13-ML127 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
SA189460L-A128-G13-ML128 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
SA189461L-A12-G2-ML12 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:2 weeks | Recovery:0 weeks
SA189462L-A132-G14-ML132 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
SA189463L-A135-G14-ML135 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
SA189464L-A136-G14-ML136 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
SA189465L-A139-G14-ML139 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
SA189466L-A140-G14-ML140 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
SA189467L-A142-G15-ML142 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
SA189468L-A143-G15-ML143 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
SA189469L-A144-G15-ML144 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
SA189470L-A145-G15-ML145 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
SA189471L-A148-G15-ML148 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
SA189472L-A15-G2-ML15 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:2 weeks | Recovery:0 weeks
SA189473L-A16-G2-ML16 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:2 weeks | Recovery:0 weeks
SA189474L-A17-G2-ML17 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:2 weeks | Recovery:0 weeks
SA189475L-A18-G2-ML18 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:2 weeks | Recovery:0 weeks
SA189476L-A22-G3-ML22 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:2 weeks | Recovery:0 weeks
SA189477L-A23-G3-ML23 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:2 weeks | Recovery:0 weeks
SA189478L-A25-G3-ML25 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:2 weeks | Recovery:0 weeks
SA189479L-A28-G3-ML28 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:2 weeks | Recovery:0 weeks
SA189480L-A2-G1-ML2 | Organ:Liver | Treatment:Control | Concentration:- | Period:2 weeks | Recovery:0 weeks
SA189481L-A30-G3-ML30 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:2 weeks | Recovery:0 weeks
SA189482L-A32-G4-ML32 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:2 weeks | Recovery:0 weeks
SA189483L-A33-G4-ML33 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:2 weeks | Recovery:0 weeks
SA189484L-A34-G4-ML34 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:2 weeks | Recovery:0 weeks
SA189485L-A36-G4-ML36 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:2 weeks | Recovery:0 weeks
SA189486L-A38-G4-ML38 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:2 weeks | Recovery:0 weeks
SA189487L-A43-G5-ML43 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:2 weeks | Recovery:0 weeks
SA189488L-A45-G5-ML45 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:2 weeks | Recovery:0 weeks
SA189489L-A47-G5-ML47 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:2 weeks | Recovery:0 weeks
SA189490L-A48-G5-ML48 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:2 weeks | Recovery:0 weeks
SA189491L-A49-G5-ML49 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:2 weeks | Recovery:0 weeks
SA189492L-A4-G1-ML4 | Organ:Liver | Treatment:Control | Concentration:- | Period:2 weeks | Recovery:0 weeks
SA189493L-A52-G6-ML52 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:0 weeks
SA189494L-A53-G6-ML53 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:0 weeks
SA189495L-A55-G6-ML55 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:0 weeks
SA189496L-A56-G6-ML56 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:0 weeks
SA189497L-A58-G6-ML58 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:0 weeks
SA189498L-A5-G1-ML5 | Organ:Liver | Treatment:Control | Concentration:- | Period:2 weeks | Recovery:0 weeks
SA189499L-A62-G7-ML62 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:0 weeks
SA189500L-A65-G7-ML65 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:0 weeks
SA189501L-A66-G7-ML66 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:0 weeks
SA189502L-A67-G7-ML67 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:0 weeks
SA189503L-A6-G1-ML6 | Organ:Liver | Treatment:Control | Concentration:- | Period:2 weeks | Recovery:0 weeks
SA189504L-A70-G7-ML70 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:0 weeks
SA189505L-A72-G8-ML72 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:0 weeks
SA189506L-A73-G8-ML73 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:0 weeks
SA189507L-A74-G8-ML74 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:0 weeks
SA189508L-A76-G8-ML76 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:0 weeks
SA189509L-A80-G8-ML80 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:0 weeks
SA189510L-A82-G9-ML82 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:0 weeks
SA189511L-A85-G9-ML85 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:0 weeks
SA189512L-A88-G9-ML88 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:0 weeks
SA189513L-A89-G9-ML89 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:0 weeks
SA189514L-A8-G1-ML8 | Organ:Liver | Treatment:Control | Concentration:- | Period:2 weeks | Recovery:0 weeks
SA189515L-A90-G9-ML90 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:0 weeks
SA189516L-A92-G10-ML92 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:0 weeks
SA189517L-A93-G10-ML93 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:0 weeks
SA189518L-A94-G10-ML94 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:0 weeks
SA189519L-A96-G10-ML96 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:0 weeks
SA189520L-A98-G10-ML98 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:0 weeks
SA189521S-A103-G11-MS103 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
SA189522S-A104-G11-MS104 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
SA189523S-A105-G11-MS105 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
SA189524S-A108-G11-MS108 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
SA189525S-A110-G11-MS110 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
SA189526S-A112-G12-MS112 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
SA189527S-A114-G12-MS114 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
SA189528S-A116-G12-MS116 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
SA189529S-A117-G12-MS117 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
SA189530S-A118-G12-MS118 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
SA189531S-A122-G13-MS122 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
SA189532S-A123-G13-MS123 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
SA189533S-A124-G13-MS124 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
SA189534S-A127-G13-MS127 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
SA189535S-A128-G13-MS128 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
SA189536S-A12-G2-MS12 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:2 weeks | Recovery:0 weeks
SA189537S-A132-G14-MS132 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
SA189538S-A135-G14-MS135 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
SA189539S-A136-G14-MS136 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
SA189540S-A139-G14-MS139 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
SA189541S-A140-G14-MS140 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
SA189542S-A142-G15-MS142 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
SA189543S-A143-G15-MS143 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
SA189544S-A144-G15-MS144 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
SA189545S-A145-G15-MS145 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
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Collection:

Collection ID:CO002098
Collection Summary:The animal experiment was done by our cooperative partner BASF. The liver and thyroid tissue samples were delivered to us with the protection of dry ice. And all samples was stored immediately under -80℃ until further analysis.
Sample Type:Tissues

Treatment:

Treatment ID:TR002117
Treatment Summary:Two well-described test chemicals, i.e. Phenytoin and Propylthiouracil, were administered via the diet at each two concentrations to male Wistar rats for 2 and 4 weeks. In addition, a recovery period of 2 weeks without test substance application was included in order to monitor reversibility of the induced effects. Phenytoin was administered concentrations of 300 and 2400 ppm, Propylthiouracil was administered at concentrations of 5 and 50 ppm. Control animals received maintenance diet only without inclusion of any test substance.

Sample Preparation:

Sampleprep ID:SP002111
Sampleprep Summary:Tissue metabolites were extracted according to our laboratory standard protocol. Briefly, about 100 mg liver and all received thyroid gland (2.4 - 34.1 mg) tissue materials were weighed and mixed with 5x extraction buffer (ACN / H2O: 1:1). With the help of added 4 metal balls, the tissue metabolites were separated by using a tissue slicer for 10 min at 30 Hz. After centrifugation of 2 min at 14,000 rpm, the metabolites containing supernatant were transfered to a fresh tube, and stored at -80℃ for further analysis. The targeted metabolomics was done by using MxP® Quant 500 kit (Biocrates). All analysis steps was followed by the manufactures from Biocrates.

Combined analysis:

Analysis ID AN003293
Analysis type MS
Chromatography type Unspecified
Chromatography system Agilent 1290 Infinity
Column MxP Quant 500 System
MS Type ESI
MS instrument type QTRAP
MS instrument name ABI Sciex 5500 QTrap
Ion Mode UNSPECIFIED
Units µM

Chromatography:

Chromatography ID:CH002432
Instrument Name:Agilent 1290 Infinity
Column Name:MxP Quant 500 System
Chromatography Type:Unspecified

MS:

MS ID:MS003063
Analysis ID:AN003293
Instrument Name:ABI Sciex 5500 QTrap
Instrument Type:QTRAP
MS Type:ESI
MS Comments:Both FIA and LC methods were used. Both positive and negative were used. The MS acquisition and Data processing were done following the manufacturer's instructions. from Biocrates
Ion Mode:UNSPECIFIED
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