Links to Metabolomics Tools

mwTab Parsers

R Packages for Statistical Analysis

Other Metabolomics Tools

  • 3Omics web tool for visualizing and rapidly integrating multiple inter- or intra-transcriptomic, proteomic, and metabolomic human data.
  • ACD/ NMR Processor Academic Edition Free NMR processing software for academic and non-commercial use only.
  • CHEMDATA.NIST.GOV Mass spectral libraries and data analysis tools include AMDIS (Automated Mass Spectral Deconvolution and Identification System for GC/MS) and MS Interpreter (for fragmentation analysis).
  • Chemical Translation ServiceWeb-based service for metabolite identifier translation between > 200 common biological databases, including: Chemical Name, InChIKey, PubChem, ChemSpider, BioCyc, ChEBI, CAS, HMDB, KEGG and LIPID MAPS.
  • Chenomix NMR Suite
  • Cytoscape Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data.
  • DeviumWebLocal or web-based data analysis and visualization tool including: dynamic data visualization, data summaries, statistical analysis, clustering, PCA, PLS, O-PLS
  • KEGG KEGG is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies
  • LIPID MAPS toolsMS analysis tools, structure drawing tools, and command line Perl scripts to generate SD files and structure and ontological data for various lipid categories.
  • MBrolemetabolite enrichment analysis
  • Metaboanalyst Tool suite for metabolomics analysis
  • Metacore integrated software suite for functional analysis of microarray, metabolic, SAGE, proteomics, siRNA, microRNA, and screening data.
  • MetaMapRLocal or web-based tool for generating biochemical interaction (KEGG), structural similarity (PubChem Substructure Fingerprints), mass spectral similarity and correlation based networks.
  • MetaP Serverautomates data analysis for the processing of metabolomics experiments
  • MetPA A web-based metabolomics tool for pathway analysis & visualization
  • MetExplore MetExplore is a free academic service allowing: Importing/storing/sharing genome scale meta­bolic networks; Map­ping poly­omics data; Path­way enrichment; Visu­al­iz­ing networks; Min­ing net­works based on data and net­work structure; and Com­put­ing fluxes http://nar.oxfordjournals.org/content/38/suppl_2/W132
  • MetscapeThe MetScape Plugin for Cytoscape provides a bioinformatics framework for the visualization and interpretation of metabolomic and expression profiling data in the context of human metabolism.
  • SAS and SAS JMP SAS on the server is for data cleansing, integration, security and access. Applications in JMP extends access to specific SAS software features, procedures and solutions.
  • Simca Multivariate statistical analysis (PCA, PLSDA etc.)
  • Statistica tools for statistical analysis of data
  • TeachingDemosTutorials, case studies and demonstrations of metabolomic data analyses
  • TIBCO Spotfire tools for statistical analysis of data
  • TransOmics Informatics Platform for bioinformatics, statistical analysis, and reporting of key results.
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