Summary of Study ST000673

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000475. The data can be accessed directly via it's Project DOI: 10.21228/M8NS47 This work is supported by NIH grant, U2C- DK119886.

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Study IDST000673
Study TitleLipidomics in (SIDS) Sudden Infant Death Syndrome
Study TypeMS analysis
Study SummarySerum samples were collected postmortem from infants dying of Sudden Infant Death Syndrome.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2017-06-05
Num Groups101
Total Subjects33
Raw Data AvailableYes
Raw Data File Type(s)wiff
Analysis Type DetailLC-MS
Release Date2017-12-06
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8NS47
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000475
Project DOI:doi: 10.21228/M8NS47
Project Title:Lipidomics in Suddent infant death syndrome
Project Type:MS analysis
Project Summary:Lipid analysis of serum in controls and SIDS infants
Institute:Boston Children's Hospital, Harvard Medical School
Department:Pathology
Laboratory:Kinney Lab
Last Name:Haynes
First Name:Robin
Address:Boston, MA
Email:robin.haynes@childrens.harvard.edu
Phone:617-763-5782

Subject:

Subject ID:SU000696
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Mammals

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Diagnosis
SA038636S00022432Control
SA038637S00022420Control
SA038638S00022428Control
SA038639S00022412Control
SA038640S00022427Control
SA038641S00022434Control
SA038642S00022436Control
SA038643S00022426Control
SA038644S00022422Control
SA038645S00022417Control
SA038646S00022425SIDS
SA038647S00022431SIDS
SA038648S00022435SIDS
SA038649S00022437SIDS
SA038650S00022433SIDS
SA038651S00022424SIDS
SA038652S00022430SIDS
SA038653S00022429SIDS
SA038654S00022421SIDS
SA038655S00022410SIDS
SA038656S00022411SIDS
SA038657S00022409SIDS
SA038658S00022408SIDS
SA038659S00022406SIDS
SA038660S00022407SIDS
SA038661S00022413SIDS
SA038662S00022414SIDS
SA038663S00022419SIDS
SA038664S00022405SIDS
SA038665S00022418SIDS
SA038666S00022416SIDS
SA038667S00022415SIDS
SA038668S00022423SIDS
Showing results 1 to 33 of 33

Collection:

Collection ID:CO000690
Collection Summary:-
Sample Type:Blood

Treatment:

Treatment ID:TR000710
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP000703
Sampleprep Summary:-
Sampleprep Protocol Filename:A004_-_Shotgun_Lipidomics.pdf

Combined analysis:

Analysis ID AN001032 AN001033
Chromatography ID CH000736 CH000736
MS ID MS000927 MS000928
Analysis type MS MS
Chromatography type Reversed phase Reversed phase
Chromatography system Shimadzu CTO-20A Nexera X2 Shimadzu CTO-20A Nexera X2
Column Waters Acquity HSS T3 (50 x 2.1mm,1.8um) Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
MS Type ESI ESI
MS instrument type Triple TOF Triple TOF
MS instrument name ABI Sciex 5600+ TripleTOF ABI Sciex 5600+ TripleTOF
Ion Mode NEGATIVE POSITIVE
Units peak area normalized peak area normalized

Chromatography:

Chromatography ID:CH000736
Instrument Name:Shimadzu CTO-20A Nexera X2
Column Name:Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
Column Temperature:55
Flow Rate:0.400uL/min
Solvent A:40% acetonitrile/60% water; 10 mM ammonium acetate
Solvent B:10% acetonitrile/5% water/85% isopropanol; 10 mM ammonium acetate
Chromatography Type:Reversed phase

MS:

MS ID:MS000927
Analysis ID:AN001032
Instrument Name:ABI Sciex 5600+ TripleTOF
Instrument Type:Triple TOF
MS Type:ESI
Ion Mode:NEGATIVE
Analysis Protocol File:A004_-_Shotgun_Lipidomics.pdf
  
MS ID:MS000928
Analysis ID:AN001033
Instrument Name:ABI Sciex 5600+ TripleTOF
Instrument Type:Triple TOF
MS Type:ESI
Ion Mode:POSITIVE
Analysis Protocol File:A004_-_Shotgun_Lipidomics.pdf
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