Summary of Study ST000766

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000552. The data can be accessed directly via it's Project DOI: 10.21228/M89T0Z This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST000766
Study TitleDifferences in metabolite profiles and antioxidant activities between wild and cultivated black soybeans evaluated by a correlation analysis (part II)
Study TypeMS analysis
Study SummaryNon-targeted metabolic profiling of 26 soybean varieties using liquid chromatography-mass spectrometry (LC-MS) including 15 wild black soybeans (WBS) and 11 cultivated black soybeans (CBS), combined with multivariate analysis, revealed significant differences in 25 differential metabolites
Institute
KIST
Last NameXu
First NameJiuliang
Addresssaimdang-ro 679, Gangneung, Gangwon, 213510, Korea, South
Email213510@kist.re.kr
Phone01024398802
Submit Date2017-07-04
Raw Data File Type(s)cdf
Analysis Type DetailLC-MS
Release Date2017-07-07
Release Version1
Jiuliang Xu Jiuliang Xu
https://dx.doi.org/10.21228/M89T0Z
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000552
Project DOI:doi: 10.21228/M89T0Z
Project Title:Soybean project
Project Summary:Non-targeted metabolic profiling of 26 soybean varieties using liquid chromatography-mass spectrometry (LC-MS) including 15 wild black soybeans (WBS) and 11 cultivated black soybeans (CBS), combined with multivariate analysis, revealed significant differences in 25 differential metabolites
Institute:KIST
Last Name:Xu
First Name:Jiuliang
Address:saimdang-ro 679, Gangneung, Gangwon, 213510, Korea, South
Email:213510@kist.re.kr
Phone:01024398802

Subject:

Subject ID:SU000789
Subject Type:plant
Subject Species:Glycine max
Taxonomy ID:3847
Species Group:Plant

Factors:

Subject type: plant; Subject species: Glycine max (Factor headings shown in green)

mb_sample_id local_sample_id type
SA04204914_CBS_11Cultivar
SA04205013_CBS_10Cultivar
SA04205118_CBS_QC2Cultivar
SA04205228_CBS_QC3Cultivar
SA04205301_CBS_1Cultivar
SA04205412_CBS_9Cultivar
SA04205508_CBS_QC1Cultivar
SA04205603_CBS_3Cultivar
SA04205711_CBS_8Cultivar
SA04205802_CBS_2Cultivar
SA04205905_CBS_5Cultivar
SA04206004_CBS_4Cultivar
SA04206107_CBS_7Cultivar
SA04206206_CBS_6Cultivar
SA04206334_WBS_14Wild
SA04206433_WBS_13Wild
SA04206532_WBS_12Wild
SA04206635_WBS_15Wild
SA04206729_WBS_QC3Wild
SA04206831_WBS_11Wild
SA04206919_WBS_QC2Wild
SA04207009_WBS_QC1Wild
SA04207117_WBS_3Wild
SA04207221_WBS_4Wild
SA04207316_WBS_2Wild
SA04207415_WBS_1Wild
SA04207522_WBS_5Wild
SA04207623_WBS_6Wild
SA04207726_WBS_9Wild
SA04207825_WBS_8Wild
SA04207924_WBS_7Wild
SA04208027_WBS_10Wild
Showing results 1 to 32 of 32

Collection:

Collection ID:CO000783
Collection Summary:Fifteen wild and 11 cultivated black soybeans were selected from the soybean germplasm collections that have been maintained by the National Institute of Crop Science in Korea
Sample Type:Plant

Treatment:

Treatment ID:TR000803
Treatment Summary:The planting density was 15 cm between plants in a row, and the rows were 70 cm apart. Field management, including irrigation, fertilizer application, and pest control followed essentially normal agricultural practices according to Rural Development Administration standard protocol

Sample Preparation:

Sampleprep ID:SP000796
Sampleprep Summary:Dried black soybeans were ground into a fine powder and sieved through a screen with a 55 mesh count, then 40 mg of the powder was mixed with 70% aqueous methanol (4mL, 1% HCl) containing 1.5 μg/ml phlorizin as an internal standard and sonicated for 30 min. The mixture was kept for approximately 16 h at room temperature in the dark.vacuum.Supernatants were filtered through a 0.20-μm syringe filter and freeze dried then reconstituted with 0.5 ml of 50% aqueous methanol for LC-MS analysis.

Combined analysis:

Analysis ID AN001212
Analysis type MS
Chromatography type Reversed phase
Chromatography system Agilent 1290
Column Prevail C18
MS Type ESI
MS instrument type QTOF
MS instrument name Bruker Daltonics
Ion Mode POSITIVE
Units peal area

Chromatography:

Chromatography ID:CH000849
Instrument Name:Agilent 1290
Column Name:Prevail C18
Chromatography Type:Reversed phase

MS:

MS ID:MS001107
Analysis ID:AN001212
Instrument Name:Bruker Daltonics
Instrument Type:QTOF
MS Type:ESI
Ion Mode:POSITIVE
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