Summary of Study ST000778

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000564. The data can be accessed directly via it's Project DOI: 10.21228/M8RT00 This work is supported by NIH grant, U2C- DK119886.

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Study IDST000778
Study TitleRat Colon Study effect of Effect of fish oil on azoxymethane (AOM)
Study TypeMS analysis
Study SummaryEffect of fish oil on azoxymethane (AOM)
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2017-06-05
Num Groups4
Total Subjects16
Raw Data AvailableYes
Raw Data File Type(s)wiff
Analysis Type DetailLC-MS
Release Date2017-12-06
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8RT00
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Project:

Project ID:PR000564
Project DOI:doi: 10.21228/M8RT00
Project Title:Rat Colon Study effect of Effect of fish oil on azoxymethane (AOM)
Project Type:MS analysis
Project Summary:16 samples from lipodomics
Institute:University of Michigan
Department:Family Medicine
Laboratory:Djuric Lab
Last Name:Djuric
First Name:Zora
Address:Ann Arbor, MI
Email:zoralogn@umich.edu
Phone:734-615-6210

Subject:

Subject ID:SU000801
Subject Type:Rat
Subject Species:Rattus norvegicus
Taxonomy ID:10116
Species Group:Mammals

Factors:

Subject type: Rat; Subject species: Rattus norvegicus (Factor headings shown in green)

mb_sample_id local_sample_id AOM Fish Oil Normal Sample type
SA042373S00020727NO NO YES Colon
SA042374S00020728NO NO YES Colon
SA042375S00020729NO NO YES Colon
SA042376S00020725NO YES YES Colon
SA042377S00020724NO YES YES Colon
SA042378S00020726NO YES YES Colon
SA042379S00020730YES NO NO Intestinal Neoplasms
SA042380S00020731YES NO NO Intestinal Neoplasms
SA042381S00020723YES NO YES Colon
SA042382S00020721YES NO YES Colon
SA042383S00020722YES NO YES Colon
SA042384S00020733YES YES NO Intestinal Neoplasms
SA042385S00020732YES YES NO Intestinal Neoplasms
SA042386S00020719YES YES YES Colon
SA042387S00020720YES YES YES Colon
SA042388S00020718YES YES YES Colon
Showing results 1 to 16 of 16

Collection:

Collection ID:CO000795
Collection Summary:-
Sample Type:Colon

Treatment:

Treatment ID:TR000815
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP000808
Sampleprep Summary:-
Sampleprep Protocol Filename:A004_-_Shotgun_Lipidomics.pdf

Combined analysis:

Analysis ID AN001230 AN001231
Chromatography ID CH000862 CH000862
MS ID MS001125 MS001126
Analysis type MS MS
Chromatography type Reversed phase Reversed phase
Chromatography system Shimadzu CTO-20A Nexera X2 Shimadzu CTO-20A Nexera X2
Column Waters Acquity HSS T3 (50 x 2.1mm,1.8um) Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
MS Type ESI ESI
MS instrument type Triple TOF Triple TOF
MS instrument name ABI Sciex 5600+ TripleTOF ABI Sciex 5600+ TripleTOF
Ion Mode NEGATIVE POSITIVE
Units peak area normalized peak area normalized

Chromatography:

Chromatography ID:CH000862
Instrument Name:Shimadzu CTO-20A Nexera X2
Column Name:Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
Column Temperature:55
Flow Rate:0.400uL/min
Solvent A:40% acetonitrile/60% water; 10 mM ammonium acetate
Solvent B:10% acetonitrile/5% water/85% isopropanol; 10 mM ammonium acetate
Chromatography Type:Reversed phase

MS:

MS ID:MS001125
Analysis ID:AN001230
Instrument Name:ABI Sciex 5600+ TripleTOF
Instrument Type:Triple TOF
MS Type:ESI
Ion Mode:NEGATIVE
Analysis Protocol File:A004_-_Shotgun_Lipidomics.pdf
  
MS ID:MS001126
Analysis ID:AN001231
Instrument Name:ABI Sciex 5600+ TripleTOF
Instrument Type:Triple TOF
MS Type:ESI
Ion Mode:POSITIVE
Analysis Protocol File:A004_-_Shotgun_Lipidomics.pdf
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