Summary of Study ST000880
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000610. The data can be accessed directly via it's Project DOI: 10.21228/M8TH6S This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
Study ID | ST000880 |
Study Title | Diet, genetics and gut microbiome drive dynamic changes in plasma metabolites [cecal] |
Study Type | Cecal data |
Study Summary | C57BL/6J mice (B6) and 129S1 mice (129J) were purchased from Jackson Laboratory (Bar Harbor, ME) and 129S6 mice (129T) were purchased from Taconic Farms (Germantown, NY). Mice were maintained on normal chow containing 22% calories from fat, 23% from protein and 55% from carbohydrates (Mouse Diet 9F 5020, PharmaServ, Framingham, MA) or a high fat diet (Open Source Diet, D12492, Research Diets, New Brunswick, NJ) containing 60% calories from fat, 20% from protein and 20% from carbohydrates. For antibiotic treatment, 6-week old mice were treated with either placebo, vancomycin (1g/L) or metronidazole (1g/L) (Sigma-Aldrich, St. Louis, MO) in drinking water then started on HFD from age 7 to 11 weeks. The mice were fasted for 2 hours and anesthetized with isoflurane before collecting cecum and plasma. |
Institute | Broad Institute of MIT and Harvard |
Last Name | Avila-Pacheco |
First Name | Julian |
Address | 415 Main Street |
jravilap@broadinstitute.org | |
Phone | 617-714-8264 |
Submit Date | 2017-10-03 |
Num Groups | 12 |
Total Subjects | 47 |
Raw Data File Type(s) | raw(Thermo) |
Analysis Type Detail | LC-MS |
Release Date | 2018-01-29 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Animal; Subject species: Mus musculus (Factor headings shown in green)
mb_sample_id | local_sample_id | Diet |
---|---|---|
SA051089 | 33_Chow_129Jax | Chow | Treatment:none | Strain:129Jax |
SA051090 | 36_Chow_129Jax | Chow | Treatment:none | Strain:129Jax |
SA051091 | 35_Chow_129Jax | Chow | Treatment:none | Strain:129Jax |
SA051092 | 34_Chow_129Jax | Chow | Treatment:none | Strain:129Jax |
SA051093 | 17_Chow_129Tac | Chow | Treatment:none | Strain:129Tac |
SA051094 | 19_Chow_129Tac | Chow | Treatment:none | Strain:129Tac |
SA051095 | 18_Chow_129Tac | Chow | Treatment:none | Strain:129Tac |
SA051096 | 20_Chow_129Tac | Chow | Treatment:none | Strain:129Tac |
SA051097 | 1_Chow_B6Jax | Chow | Treatment:none | Strain:B6Jax |
SA051098 | 3_Chow_B6Jax | Chow | Treatment:none | Strain:B6Jax |
SA051099 | 2_Chow_B6Jax | Chow | Treatment:none | Strain:B6Jax |
SA051100 | 47_HFD Metronidazole_129Jax | HFD | Treatment:metronidazole | Strain:129Jax |
SA051101 | 48_HFD Metronidazole_129Jax | HFD | Treatment:metronidazole | Strain:129Jax |
SA051102 | 45_HFD Metronidazole_129Jax | HFD | Treatment:metronidazole | Strain:129Jax |
SA051103 | 46_HFD Metronidazole_129Jax | HFD | Treatment:metronidazole | Strain:129Jax |
SA051104 | 29_HFD Metronidazole_129Tac | HFD | Treatment:metronidazole | Strain:129Tac |
SA051105 | 31_HFD Metronidazole_129Tac | HFD | Treatment:metronidazole | Strain:129Tac |
SA051106 | 32_HFD Metronidazole_129Tac | HFD | Treatment:metronidazole | Strain:129Tac |
SA051107 | 30_HFD Metronidazole_129Tac | HFD | Treatment:metronidazole | Strain:129Tac |
SA051108 | 15_HFD Metronidazole_B6Jax | HFD | Treatment:metronidazole | Strain:B6Jax |
SA051109 | 16_HFD Metronidazole_B6Jax | HFD | Treatment:metronidazole | Strain:B6Jax |
SA051110 | 13_HFD Metronidazole_B6Jax | HFD | Treatment:metronidazole | Strain:B6Jax |
SA051111 | 14_HFD Metronidazole_B6Jax | HFD | Treatment:metronidazole | Strain:B6Jax |
SA051112 | 40_HFD Placebo_129Jax | HFD | Treatment:placebo | Strain:129Jax |
SA051113 | 39_HFD Placebo_129Jax | HFD | Treatment:placebo | Strain:129Jax |
SA051114 | 37_HFD Placebo_129Jax | HFD | Treatment:placebo | Strain:129Jax |
SA051115 | 38_HFD Placebo_129Jax | HFD | Treatment:placebo | Strain:129Jax |
SA051116 | 21_HFD Placebo_129Tac | HFD | Treatment:placebo | Strain:129Tac |
SA051117 | 22_HFD Placebo_129Tac | HFD | Treatment:placebo | Strain:129Tac |
SA051118 | 24_HFD Placebo_129Tac | HFD | Treatment:placebo | Strain:129Tac |
SA051119 | 23_HFD Placebo_129Tac | HFD | Treatment:placebo | Strain:129Tac |
SA051120 | 7_HFD Placebo_B6Jax | HFD | Treatment:placebo | Strain:B6Jax |
SA051121 | 8_HFD Placebo_B6Jax | HFD | Treatment:placebo | Strain:B6Jax |
SA051122 | 5_HFD Placebo_B6Jax | HFD | Treatment:placebo | Strain:B6Jax |
SA051123 | 6_HFD Placebo_B6Jax | HFD | Treatment:placebo | Strain:B6Jax |
SA051124 | 41_HFD Vancomycin_129Jax | HFD | Treatment:vancomycin | Strain:129Jax |
SA051125 | 42_HFD Vancomycin_129Jax | HFD | Treatment:vancomycin | Strain:129Jax |
SA051126 | 44_HFD Vancomycin_129Jax | HFD | Treatment:vancomycin | Strain:129Jax |
SA051127 | 43_HFD Vancomycin_129Jax | HFD | Treatment:vancomycin | Strain:129Jax |
SA051128 | 25_HFD Vancomycin_129Tac | HFD | Treatment:vancomycin | Strain:129Tac |
SA051129 | 28_HFD Vancomycin_129Tac | HFD | Treatment:vancomycin | Strain:129Tac |
SA051130 | 26_HFD Vancomycin_129Tac | HFD | Treatment:vancomycin | Strain:129Tac |
SA051131 | 27_HFD Vancomycin_129Tac | HFD | Treatment:vancomycin | Strain:129Tac |
SA051132 | 9_HFD Vancomycin_B6Jax | HFD | Treatment:vancomycin | Strain:B6Jax |
SA051133 | 10_HFD Vancomycin_B6Jax | HFD | Treatment:vancomycin | Strain:B6Jax |
SA051134 | 12_HFD Vancomycin_B6Jax | HFD | Treatment:vancomycin | Strain:B6Jax |
SA051135 | 11_HFD Vancomycin_B6Jax | HFD | Treatment:vancomycin | Strain:B6Jax |
Showing results 1 to 47 of 47 |