Summary of study ST001154

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000773. The data can be accessed directly via it's Project DOI: 10.21228/M86T1D This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

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Study IDST001154
Study TitleA comprehensive plasma metabolomics dataset for a cohort of mouse knockouts within the International Mouse Phenotyping Consortium
Study SummaryUntargeted and targeted metabolomics datasets were acquired for blood plasma samples of 30 mouse knockouts within the International Mouse Phenotyping Consortium (IMPC). http://www.mousephenotype.org/. West Coast Metabolomics Center at UC Davis (https://metabolomics.ucdavis.edu/) conducted the metabolomics analyses.
Institute
University of California, Davis
DepartmentGenome Center
LaboratoryWest Coast Metabolomics Center
Last NameBarupal
First NameDinesh
Address451 East Health Science Drive
Emaildinkumar@ucdavis.edu
Phone5309794354
Submit Date2019-03-12
Num Groups31
Total Subjects220
Num Males110
Num Females110
Raw Data AvailableYes
Raw Data File Type(s).mzML
Analysis Type DetailGC/LC-MS
Release Date2019-04-12
Release Version1
Dinesh Barupal Dinesh Barupal
https://dx.doi.org/10.21228/M86T1D
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Combined analysis:

Analysis ID AN001941 AN001942 AN001943 AN001944 AN001945 AN001946 AN001947
Analysis type MS MS MS MS MS MS MS
Chromatography type GC Reversed phase Reversed phase HILIC HILIC Reversed phase Reversed phase
Chromatography system Agilent 6890N Thermo Vanquish Thermo Vanquish Thermo Vanquish Thermo Vanquish Waters Acquity I-Class Waters Acquity I-Class
Column Restek Rtx-5Sil MS (30 x 0.25mm, 0.25um) Waters Acquity CSH C18 (100 x 2.1mm, 1.7um) Waters Acquity CSH C18 (100 x 2.1mm, 1.7um) Waters Acquity BEH Amide (150 x 2.1mm, 1.7um) Waters Acquity BEH Amide (150 x 2.1mm, 1.7um) Waters Acquity BEH C18 (100 x 2mm, 1.7um) Waters Acquity BEH C18 (100 x 2mm, 1.7um)
MS Type EI ESI ESI ESI ESI ESI ESI
MS instrument type GC-TOF Orbitrap Orbitrap Orbitrap Orbitrap Ion trap Ion trap
MS instrument name Leco Pegasus IV TOF Thermo Q Exactive Plus Orbitrap Thermo Q Exactive Plus Orbitrap Thermo Q Exactive HF hybrid Orbitrap Thermo Q Exactive HF hybrid Orbitrap ABI Sciex 6500 QTrap ABI Sciex 6500 QTrap
Ion Mode NEGATIVE POSITIVE NEGATIVE POSITIVE NEGATIVE UNSPECIFIED NEGATIVE
Units normalized peak height normalized peak height normalized peak height normalized peak height normalized peak height nM nM

Chromatography:

Chromatography ID:CH001408
Instrument Name:Agilent 6890N
Column Name:Restek Rtx-5Sil MS (30 x 0.25mm, 0.25um)
Chromatography Type:GC
  
Chromatography ID:CH001409
Instrument Name:Thermo Vanquish
Column Name:Waters Acquity CSH C18 (100 x 2.1mm, 1.7um)
Chromatography Type:Reversed phase
  
Chromatography ID:CH001410
Instrument Name:Thermo Vanquish
Column Name:Waters Acquity BEH Amide (150 x 2.1mm, 1.7um)
Chromatography Type:HILIC
  
Chromatography ID:CH001411
Instrument Name:Waters Acquity I-Class
Column Name:Waters Acquity BEH C18 (100 x 2mm, 1.7um)
Chromatography Type:Reversed phase
  
Chromatography ID:CH001412
Instrument Name:Waters Acquity I-Class
Column Name:Waters Acquity BEH C18 (100 x 2mm, 1.7um)
Chromatography Type:Reversed phase
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