Summary of Study ST001163

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench,, where it has been assigned Project ID PR000747. The data can be accessed directly via it's Project DOI: 10.21228/M8469M This work is supported by NIH grant, U2C- DK119886.


This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST001163
Study TitleVariability in metabolomic profiles among unique genotypes of Acropora cervicornis (part-II)
Study SummaryWe hypothesized that each of the three genotypes tested would have unique metabolomic profiles. These data increase our basic knowledge of the coral metabolome and represent an important step toward linking genotype, phenotype, and metabolome in reef-building corals.
University of Florida
DepartmentFlorida Aquarium Center for Conservation
Last NamePatterson
First NameJoshua
Address529 Estuary Shore Lane, Apollo Beach, FL 33572
Submit Date2019-03-11
Num Groups3
Total Subjects16
Raw Data File Type(s)raw(Thermo)
Analysis Type DetailLC-MS
Release Date2020-03-11
Release Version1
Joshua Patterson Joshua Patterson application/zip

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Collection ID:CO001222
Collection Summary:Coral colonies were brought to the surface intact, and ~3 cm nubbins were clipped from actively growing branch tips. Nubbins were placed in 20 mL scintillation vials containing 10 mL of 100% methanol spiked with a 0.005 mM aminoanthracene standard and immedately placed on ice. Samples were stored in a -20°C freezer overnight, then transported back to the laboratory n ice and again stored in a 20°C freezer overnight prior to extraction. The next day, samples were agitated for 5 minutes, then allowed to settle for one hour in the -20°C freezer. One mL of the sample extract was transferred to clean 1.5 mL microcentrifuge tubes and centrifuged at 20,000 g for 5 minutes. The supernatant was then transferred to a new 1.5 mL microcentrifuge tube and stored in a -80°C freezer until processing.
Sample Type:Tissue and skeleton