Summary of Study ST001847
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001164. The data can be accessed directly via it's Project DOI: 10.21228/M87T3G This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST001847 |
| Study Title | Standardized gnotobiotic mouse model for NMR based phenotyping |
| Study Summary | Germ-free mice were inoculated with 15 representative bacterial strains selected from specific pathogen-free mice. All three microbiota mouse models were generated in two different facility sites and collected plasma sample phenotyped by NMR. 58 mice from Facility 1 (32 males and 26 females) and 59 mice from Facility 2 (29 males and 30 females) were used for analysis. |
| Institute | Bioaster |
| Department | OMICS Hub |
| Laboratory | Metabolomics |
| Last Name | Andrei |
| First Name | B |
| Address | 40 avenue Tony Garnier |
| andrei.bunescu@bioaster.org | |
| Phone | +33481110650 |
| Submit Date | 2021-06-17 |
| Num Groups | 3 |
| Total Subjects | 117 |
| Num Males | 61 |
| Num Females | 56 |
| Publications | https://doi.org/10.1101/2019.12.30.890954 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | fid |
| Analysis Type Detail | NMR |
| Release Date | 2021-08-02 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Mammal; Subject species: Mus musculus (Factor headings shown in green)
| mb_sample_id | local_sample_id | Facility | Group | Sex | Analysis |
|---|---|---|---|---|---|
| SA171734 | GM142-L | Facility1 | GF | F | Lipids |
| SA171735 | GM138-L | Facility1 | GF | F | Lipids |
| SA171736 | GM144-L | Facility1 | GF | F | Lipids |
| SA171737 | GM146-L | Facility1 | GF | F | Lipids |
| SA171738 | GM76-L | Facility1 | GF | F | Lipids |
| SA171739 | GM149-L | Facility1 | GF | F | Lipids |
| SA171740 | GM77-L | Facility1 | GF | F | Lipids |
| SA171741 | GM149 | Facility1 | GF | F | Polar |
| SA171742 | GM142 | Facility1 | GF | F | Polar |
| SA171743 | GM146 | Facility1 | GF | F | Polar |
| SA171744 | GM138 | Facility1 | GF | F | Polar |
| SA171745 | GM76 | Facility1 | GF | F | Polar |
| SA171746 | GM144 | Facility1 | GF | F | Polar |
| SA171747 | GM77 | Facility1 | GF | F | Polar |
| SA171748 | GM140-L | Facility1 | GF | M | Lipids |
| SA171749 | GM141-L | Facility1 | GF | M | Lipids |
| SA171750 | GM143-L | Facility1 | GF | M | Lipids |
| SA171751 | GM145-L | Facility1 | GF | M | Lipids |
| SA171752 | GM148-L | Facility1 | GF | M | Lipids |
| SA171753 | GM151-L | Facility1 | GF | M | Lipids |
| SA171754 | GM147-L | Facility1 | GF | M | Lipids |
| SA171755 | GM78-L | Facility1 | GF | M | Lipids |
| SA171756 | GM139-L | Facility1 | GF | M | Lipids |
| SA171757 | GM79-L | Facility1 | GF | M | Lipids |
| SA171758 | GM141 | Facility1 | GF | M | Polar |
| SA171759 | GM148 | Facility1 | GF | M | Polar |
| SA171760 | GM151 | Facility1 | GF | M | Polar |
| SA171761 | GM78 | Facility1 | GF | M | Polar |
| SA171762 | GM79 | Facility1 | GF | M | Polar |
| SA171763 | GM139 | Facility1 | GF | M | Polar |
| SA171764 | GM147 | Facility1 | GF | M | Polar |
| SA171765 | GM145 | Facility1 | GF | M | Polar |
| SA171766 | GM143 | Facility1 | GF | M | Polar |
| SA171767 | GM140 | Facility1 | GF | M | Polar |
| SA171768 | GM69-L | Facility1 | GM15 | F | Lipids |
| SA171769 | GM66-L | Facility1 | GM15 | F | Lipids |
| SA171770 | GM70-L | Facility1 | GM15 | F | Lipids |
| SA171771 | GM68-L | Facility1 | GM15 | F | Lipids |
| SA171772 | GM124-L | Facility1 | GM15 | F | Lipids |
| SA171773 | GM122-L | Facility1 | GM15 | F | Lipids |
| SA171774 | GM60-L | Facility1 | GM15 | F | Lipids |
| SA171775 | GM127-L | Facility1 | GM15 | F | Lipids |
| SA171776 | GM123-L | Facility1 | GM15 | F | Lipids |
| SA171777 | GM69 | Facility1 | GM15 | F | Polar |
| SA171778 | GM60 | Facility1 | GM15 | F | Polar |
| SA171779 | GM127 | Facility1 | GM15 | F | Polar |
| SA171780 | GM66 | Facility1 | GM15 | F | Polar |
| SA171781 | GM68 | Facility1 | GM15 | F | Polar |
| SA171782 | GM123 | Facility1 | GM15 | F | Polar |
| SA171783 | GM122 | Facility1 | GM15 | F | Polar |
| SA171784 | GM124 | Facility1 | GM15 | F | Polar |
| SA171785 | GM70 | Facility1 | GM15 | F | Polar |
| SA171786 | GM129-L | Facility1 | GM15 | M | Lipids |
| SA171787 | GM130-L | Facility1 | GM15 | M | Lipids |
| SA171788 | GM128-L | Facility1 | GM15 | M | Lipids |
| SA171789 | GM63-L | Facility1 | GM15 | M | Lipids |
| SA171790 | GM125-L | Facility1 | GM15 | M | Lipids |
| SA171791 | GM126-L | Facility1 | GM15 | M | Lipids |
| SA171792 | GM131-L | Facility1 | GM15 | M | Lipids |
| SA171793 | GM61-L | Facility1 | GM15 | M | Lipids |
| SA171794 | GM132-L | Facility1 | GM15 | M | Lipids |
| SA171795 | GM62-L | Facility1 | GM15 | M | Lipids |
| SA171796 | GM73-L | Facility1 | GM15 | M | Lipids |
| SA171797 | GM71-L | Facility1 | GM15 | M | Lipids |
| SA171798 | GM132 | Facility1 | GM15 | M | Polar |
| SA171799 | GM61 | Facility1 | GM15 | M | Polar |
| SA171800 | GM73 | Facility1 | GM15 | M | Polar |
| SA171801 | GM125 | Facility1 | GM15 | M | Polar |
| SA171802 | GM129 | Facility1 | GM15 | M | Polar |
| SA171803 | GM62 | Facility1 | GM15 | M | Polar |
| SA171804 | GM128 | Facility1 | GM15 | M | Polar |
| SA171805 | GM130 | Facility1 | GM15 | M | Polar |
| SA171806 | GM63 | Facility1 | GM15 | M | Polar |
| SA171807 | GM131 | Facility1 | GM15 | M | Polar |
| SA171808 | GM126 | Facility1 | GM15 | M | Polar |
| SA171809 | GM71 | Facility1 | GM15 | M | Polar |
| SA171810 | GM101-L | Facility1 | SOPF | F | Lipids |
| SA171811 | GM106-L | Facility1 | SOPF | F | Lipids |
| SA171812 | GM119-L | Facility1 | SOPF | F | Lipids |
| SA171813 | GM118-L | Facility1 | SOPF | F | Lipids |
| SA171814 | GM105-L | Facility1 | SOPF | F | Lipids |
| SA171815 | GM104-L | Facility1 | SOPF | F | Lipids |
| SA171816 | GM98-L | Facility1 | SOPF | F | Lipids |
| SA171817 | GM99-L | Facility1 | SOPF | F | Lipids |
| SA171818 | GM100-L | Facility1 | SOPF | F | Lipids |
| SA171819 | GM102-L | Facility1 | SOPF | F | Lipids |
| SA171820 | GM100 | Facility1 | SOPF | F | Polar |
| SA171821 | GM106 | Facility1 | SOPF | F | Polar |
| SA171822 | GM119 | Facility1 | SOPF | F | Polar |
| SA171823 | GM118 | Facility1 | SOPF | F | Polar |
| SA171824 | GM99 | Facility1 | SOPF | F | Polar |
| SA171825 | GM101 | Facility1 | SOPF | F | Polar |
| SA171826 | GM98 | Facility1 | SOPF | F | Polar |
| SA171827 | GM104 | Facility1 | SOPF | F | Polar |
| SA171828 | GM105 | Facility1 | SOPF | F | Polar |
| SA171829 | GM102 | Facility1 | SOPF | F | Polar |
| SA171830 | GM93-L | Facility1 | SOPF | M | Lipids |
| SA171831 | GM110-L | Facility1 | SOPF | M | Lipids |
| SA171832 | GM109-L | Facility1 | SOPF | M | Lipids |
| SA171833 | GM108-L | Facility1 | SOPF | M | Lipids |
