Summary of Study ST000784
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000570. The data can be accessed directly via it's Project DOI: 10.21228/M80D5X This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
Study ID | ST000784 |
Study Title | metabolome in a group of AA and EA matched pairs of prostate cancer (PCa) and benign adjacent tissues |
Study Summary | 10 µL of suspended samples was injected and analyzed using a 6495 triple quadrupole mass spectrometer (Agilent Technologies, Santa Clara, CA) coupled to a HPLC system (Agilent Technologies, Santa Clara, CA) via Multiple reaction monitoring (MRM) of a total of 240 endogenous water soluble metabolites for steady-state analyses of samples. Those 240 compounds monitored were chosen due to their involvement in central pathways important in a number of malignancies. Source parameters were as follows: Gas temperature was 250 °C; Gas flow was 14 l/min; Nebulizer was 20psi; Sheath gas temperature was 350 °C; Sheath gas flow was 12 l/min; Capillary was 3000 V positive and 3000 V negative; Nozzle voltage was 1500 V positive and 1500 V negative. Approximately 8–11 data points were acquired per detected metabolite. Samples were delivered to the MS via normal phase chromatography using either a 4.6 mm i.d ×10 cm Amide XBridge HILIC column (Waters) or a Luna 3µ NH2 100A (Phenomenex) at 300 µL/min |
Institute | Baylor College of Medicine |
Last Name | Sreekumar |
First Name | Arun |
Address | One Baylor Plaza, Houston, TX, 77030, USA |
Arun.Sreekumar@bcm.edu | |
Phone | 713-798-3305 |
Submit Date | 2017-05-17 |
Raw Data Available | Yes |
Raw Data File Type(s) | d |
Analysis Type Detail | LC-MS |
Release Date | 2019-07-17 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)
mb_sample_id | local_sample_id | Diagnosis | Race |
---|---|---|---|
SA042725 | 36673 | Benign | AA |
SA042726 | 36916 | Benign | AA |
SA042727 | 37687 | Benign | AA |
SA042728 | 32871 | Benign | AA |
SA042729 | 37654 | Benign | AA |
SA042730 | 32595 | Benign | AA |
SA042731 | 23979 | Benign | AA |
SA042732 | 31703 | Benign | AA |
SA042733 | 32567 | Benign | AA |
SA042734 | 37976 | Benign | AA |
SA042735 | 43779 | Benign | AA |
SA042736 | 53247 | Benign | AA |
SA042737 | 53983 | Benign | AA |
SA042738 | 54182 | Benign | AA |
SA042739 | 59701 | Benign | AA |
SA042740 | 53131 | Benign | AA |
SA042741 | 52012 | Benign | AA |
SA042742 | 22693 | Benign | AA |
SA042743 | 47605 | Benign | AA |
SA042744 | 50742 | Benign | AA |
SA042745 | 3609 | Benign | AA |
SA042746 | 42957 | Benign | AA |
SA042747 | 18476 | Benign | AA |
SA042748 | 19338 | Benign | AA |
SA042749 | 19051 | Benign | AA |
SA042750 | 19205 | Benign | AA |
SA042751 | 10188 | Benign | AA |
SA042752 | 5050 | Benign | AA |
SA042753 | 10506 | Benign | AA |
SA042754 | 22346 | Benign | AA |
SA042755 | 21274 | Benign | AA |
SA042756 | 8678 | Benign | AA |
SA042757 | 10524 | Benign | AA |
SA042758 | 19567 | Benign | EA |
SA042759 | 17626 | Benign | EA |
SA042760 | 17637 | Benign | EA |
SA042761 | 23868 | Benign | EA |
SA042762 | 24070 | Benign | EA |
SA042763 | 39117 | Benign | EA |
SA042764 | 36361 | Benign | EA |
SA042765 | 31630 | Benign | EA |
SA042766 | 26163 | Benign | EA |
SA042767 | 39907 | Benign | EA |
SA042768 | 25793 | Benign | EA |
SA042769 | 25923 | Benign | EA |
SA042770 | 25944 | Benign | EA |
SA042771 | 53248 | Cancer | AA |
SA042772 | 3608 | Cancer | AA |
SA042773 | 22343 | Cancer | AA |
SA042774 | 8680 | Cancer | AA |
SA042775 | 54184 | Cancer | AA |
SA042776 | 59703 | Cancer | AA |
SA042777 | 5057 | Cancer | AA |
SA042778 | 53984 | Cancer | AA |
SA042779 | 53132 | Cancer | AA |
SA042780 | 19204 | Cancer | AA |
SA042781 | 32594 | Cancer | AA |
SA042782 | 32870 | Cancer | AA |
SA042783 | 52014 | Cancer | AA |
SA042784 | 19053 | Cancer | AA |
SA042785 | 32564 | Cancer | AA |
SA042786 | 19337 | Cancer | AA |
SA042787 | 22694 | Cancer | AA |
SA042788 | 21275 | Cancer | AA |
SA042789 | 23977 | Cancer | AA |
SA042790 | 31708 | Cancer | AA |
SA042791 | 36914 | Cancer | AA |
SA042792 | 36668 | Cancer | AA |
SA042793 | 43782 | Cancer | AA |
SA042794 | 42955 | Cancer | AA |
SA042795 | 10512 | Cancer | AA |
SA042796 | 47603 | Cancer | AA |
SA042797 | 10184 | Cancer | AA |
SA042798 | 50739 | Cancer | AA |
SA042799 | 37977 | Cancer | AA |
SA042800 | 10526 | Cancer | AA |
SA042801 | 37653 | Cancer | AA |
SA042802 | 18473 | Cancer | AA |
SA042803 | 37689 | Cancer | AA |
SA042804 | 17627 | Cancer | EA |
SA042805 | 36357 | Cancer | EA |
SA042806 | 39116 | Cancer | EA |
SA042807 | 19564 | Cancer | EA |
SA042808 | 39910 | Cancer | EA |
SA042809 | 23870 | Cancer | EA |
SA042810 | 26166 | Cancer | EA |
SA042811 | 25945 | Cancer | EA |
SA042812 | 17643 | Cancer | EA |
SA042813 | 24068 | Cancer | EA |
SA042814 | 26084 | Cancer | EA |
SA042815 | 25794 | Cancer | EA |
SA042816 | 25922 | Cancer | EA |
Showing results 1 to 92 of 92 |