Summary of Study ST001029

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000687. The data can be accessed directly via it's Project DOI: 10.21228/M8W109 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST001029
Study TitleAn integrated, high-throughput strategy for multi-omic systems level analysis
Study SummaryThis report details the automation, benchmarking, and application of a strategy for transcriptomic, proteomic, and metabolomic analyses from a common sample. The approach, Sample Preparation for multi-Omics Technologies (SPOT), provides equivalent performance to typical individual omic preparation methods, but it greatly enhances throughput and minimizes the resources required for multi-omic experiments. SPOT was applied to a multi-omics time course experiment for zinc-treated HL60 cells.
Institute
Vanderbilt University
DepartmentChemistry
Last NameGant-Branum
First NameRandi
Address2201 West End Ave, Nashville, TN 37235
Emailrandi.l.gant-branum@vanderbilt.edu
Phone9312065092
Submit Date2018-05-08
Num Groups6
Analysis Type DetailLC-MS
Release Date2018-08-27
Release Version1
Randi Gant-Branum Randi Gant-Branum
https://dx.doi.org/10.21228/M8W109
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Factors:

Subject type: Cultured cells; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id time point sample type
SA064561sds_20160428s_18h_HILIC_Zn_HL60_challenge_Con118 hr Control
SA064562rgb_20160511_RTA_18Hr_Zn_HL60_challenge_CON0218 hr Control
SA064563rgb_20160511_RTA_18Hr_Zn_HL60_challenge_CON0118 hr Control
SA064564rgb_20160511_RTA_18Hr_Zn_HL60_challenge_CON0318 hr Control
SA064565sds_20160428s_18h_HILIC_Zn_HL60_challenge_Con218 hr Control
SA064566sds_20160428s_18h_HILIC_Zn_HL60_challenge_Con318 hr Control
SA064567sds_20160520s_18h_HILIC_Zn_HL60_challenge_rgb_QC_10uL_C1818 hr QC
SA064568sds_20160520s_18h_HILIC_Zn_HL60_challenge_rgb_10uL_QC18 hr QC
SA064569rgb_20160511_RTA_18Hr_Zn_HL60_challenge_QC18 hr QC
SA064570sds_20160520s_18h_Zn_HL60_challenge_rgb_QC18 hr QC
SA064571sds_20160428s_18h_HILIC_Zn_HL60_challenge_Treated318 hr Treated
SA064572rgb_20160511_RTA_18Hr_Zn_HL60_challenge_TREAT0218 hr Treated
SA064573sds_20160428s_18h_HILIC_Zn_HL60_challenge_Treated118 hr Treated
SA064574sds_20160428s_18h_HILIC_Zn_HL60_challenge_Treated218 hr Treated
SA064575rgb_20160511_RTA_18Hr_Zn_HL60_challenge_TREAT0318 hr Treated
SA064576rgb_20160511_RTA_18Hr_Zn_HL60_challenge_TREAT0118 hr Treated
SA064543sgc_050516r_HL60_Zn1h_C_011 hr Control
SA064544sgc_050516r_HL60_Zn1h_C_031 hr Control
SA064545sgc_050516r_HL60_Zn1h_C_041 hr Control
SA064546sgc_050516r_HL60_Zn1h_C_021 hr Control
SA064547sds_20160509s_HL60_Zn_practice_1hr_Control11 hr Control
SA064548sds_20160509s_HL60_Zn_practice_1hr_Control21 hr Control
SA064549sds_20160509s_HL60_Zn_practice_1hr_Control31 hr Control
SA064550sds_20160509s_HL60_Zn_practice_1hr_Control41 hr Control
SA064551sgc_050516r_HL60_Zn1h_QC1 hr QC
SA064552sds_20160509s_HL60_Zn_practice_1hr_QC1 hr QC
SA064553sgc_050516r_HL60_Zn1h_T_021 hr Treated
SA064554sgc_050516r_HL60_Zn1h_T_031 hr Treated
SA064555sgc_050516r_HL60_Zn1h_T_041 hr Treated
SA064556sgc_050516r_HL60_Zn1h_T_011 hr Treated
SA064557sds_20160509s_HL60_Zn_practice_1hr_Treated31 hr Treated
SA064558sds_20160509s_HL60_Zn_practice_1hr_Treated21 hr Treated
SA064559sds_20160509s_HL60_Zn_practice_1hr_Treated11 hr Treated
SA064560sds_20160509s_HL60_Zn_practice_1hr_Treated41 hr Treated
SA064577rgb_20160511_RTA_24Hr_Zn_HL60_challenge_CON0324 hr Control
SA064578rgb_20160511_RTA_24Hr_Zn_HL60_challenge_CON0224 hr Control
SA064579rgb_20160511_RTA_24Hr_Zn_HL60_challenge_CON0424 hr Control
SA064580rgb_20160511_RTA_24Hr_Zn_HL60_challenge_CON0124 hr Control
SA064581sds_20160428s_24h_HILIC_Zn_HL60_challenge_Con424 hr Control
SA064582sds_20160428s_24h_HILIC_Zn_HL60_challenge_Con324 hr Control
SA064583sds_20160428s_24h_HILIC_Zn_HL60_challenge_Con124 hr Control
SA064584sds_20160428s_24h_HILIC_Zn_HL60_challenge_Con224 hr Control
SA064585sds_20160520s_24h_HILIC_Zn_HL60_challenge_rgb_QC_10uL_C1824 hr QC
SA064586rgb_20160511_RTA_24Hr_Zn_HL60_challenge_QC24 hr QC
SA064587sds_20160521s_24h_Zn_HL60_challenge_rgb_QC24 hr QC
SA064588sds_20160521s_24h_HILIC_Zn_HL60_challenge_rgb_QC_10uL_0524 hr QC
SA064589rgb_20160511_RTA_24Hr_Zn_HL60_challenge_QCRM24 hr QC
SA064590sds_20160520s_24h_HILIC_Zn_HL60_challenge_rgb_10uL_QC24 hr QC
SA064591sds_20160428s_24h_HILIC_Zn_HL60_challenge_Treated224 hr Treated
SA064592sds_20160428s_24h_HILIC_Zn_HL60_challenge_Treated324 hr Treated
SA064593sds_20160428s_24h_HILIC_Zn_HL60_challenge_Treated424 hr Treated
SA064594sds_20160428s_24h_HILIC_Zn_HL60_challenge_Treated124 hr Treated
SA064595rgb_20160511_RTA_24Hr_Zn_HL60_challenge_TREAT0124 hr Treated
SA064596rgb_20160511_RTA_24Hr_Zn_HL60_challenge_TREAT0324 hr Treated
SA064597rgb_20160511_RTA_24Hr_Zn_HL60_challenge_TREAT0224 hr Treated
SA064598rgb_20160511_RTA_24Hr_Zn_HL60_challenge_TREAT0424 hr Treated
SA064599rgb_20160520_RTA_HL60_ZN_36HR_CON336 hr Control
SA064600rgb_20160520_RTA_HL60_ZN_36HR_CON436 hr Control
SA064601rgb_20160520_RTA_HL60_ZN_36HR_CON236 hr Control
SA064602sds_20160606s_36h_HILIC_Zn_HL60_challenge_Con536 hr Control
SA064603sds_20160606s_36h_HILIC_Zn_HL60_challenge_Con136 hr Control
SA064604sds_20160606s_36h_HILIC_Zn_HL60_challenge_Con236 hr Control
SA064605rgb_20160520_RTA_HL60_ZN_36HR_CON136 hr Control
SA064606sds_20160606s_36h_HILIC_Zn_HL60_challenge_Con336 hr Control
SA064607sds_20160606s_36h_HILIC_Zn_HL60_challenge_rgb_QC36 hr QC
SA064608rgb_20160520_RTA_HL60_ZN_36HR_QC36 hr QC
SA064609sds_20160606s_36h_HILIC_Zn_HL60_challenge_Treated136 hr Treated
SA064610sds_20160606s_36h_HILIC_Zn_HL60_challenge_Treated536 hr Treated
SA064611sds_20160606s_36h_HILIC_Zn_HL60_challenge_Treated336 hr Treated
SA064612sds_20160606s_36h_HILIC_Zn_HL60_challenge_Treated236 hr Treated
SA064613sds_20160607s_48h_HILIC_Zn_HL60_challenge_Con248 hr Control
SA064614sds_20160607s_48h_HILIC_Zn_HL60_challenge_Con448 hr Control
SA064615rgb_20160520r_b_RTA_HL60_ZN_48HR_CON448 hr Control
SA064616rgb_20160520r_b_RTA_HL60_ZN_48HR_CON348 hr Control
SA064617rgb_20160520r_b_RTA_HL60_ZN_48HR_CON148 hr Control
SA064618sds_20160607s_48h_HILIC_Zn_HL60_challenge_Con348 hr Control
SA064619sds_20160607s_48h_HILIC_Zn_HL60_challenge_Con148 hr Control
SA064620rgb_20160520r_b_RTA_HL60_ZN_48HR_QC48 hr QC
SA064621sds_20160607s_48h_HILIC_Zn_HL60_challenge_rgb_QC_C18_10uL48 hr QC
SA064622sds_20160607s_48h_HILIC_Zn_HL60_challenge_rgb_QC48 hr QC
SA064623sds_20160607s_48h_HILIC_Zn_HL60_challenge_Treated248 hr Treated
SA064624sds_20160607s_48h_HILIC_Zn_HL60_challenge_Treated448 hr Treated
SA064625sds_20160607s_48h_HILIC_Zn_HL60_challenge_Treated348 hr Treated
SA064626rgb_20160520r_b_RTA_HL60_ZN_48HR_TREAT148 hr Treated
SA064627rgb_20160520r_b_RTA_HL60_ZN_48HR_TREAT448 hr Treated
SA064628rgb_20160520r_b_RTA_HL60_ZN_48HR_TREAT348 hr Treated
SA064629rgb_20160520r_b_RTA_HL60_ZN_48HR_TREAT248 hr Treated
SA064630sds_20160607s_48h_HILIC_Zn_HL60_challenge_Treated148 hr Treated
SA064631RGB_20160509r_RTA_6hr_Zn_HL60_challenge_CON036 hr Control
SA064632RGB_20160509r_RTA_6hr_Zn_HL60_challenge_CON046 hr Control
SA064633sds_20160512s_HILIC_HL60_Zn_Practice_6hr_Con26 hr Control
SA064634sds_20160512s_HILIC_HL60_Zn_Practice_6hr_Con36 hr Control
SA064635RGB_20160509r_RTA_6hr_Zn_HL60_challenge_CON026 hr Control
SA064636sds_20160512s_HILIC_HL60_Zn_Practice_6hr_Con16 hr Control
SA064637sds_20160512s_HILIC_HL60_Zn_Practice_6hr_Con46 hr Control
SA064638RGB_20160509r_RTA_6hr_Zn_HL60_challenge_QC6 hr QC
SA064639sds_20160512s_HILIC_HL60_Zn_Practice_6hr_QC6 hr QC
SA064640RGB_20160509r_RTA_6hr_Zn_HL60_challenge_TREAT036 hr Treated
SA064641RGB_20160509r_RTA_6hr_Zn_HL60_challenge_TREAT046 hr Treated
SA064642sds_20160512s_HILIC_HL60_Zn_Practice_6hr_Treat26 hr Treated
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