Summary of Study ST002510
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001620. The data can be accessed directly via it's Project DOI: 10.21228/M89B04 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST002510 |
| Study Title | Strain supernatants: Strain diversity of Eggerthella lenta metabolites in defined media |
| Study Type | Untargeted LC-MS |
| Study Summary | This dataset contains untargeted metabolomics analysis of supernatants from stationary phase of a collection of 30 strains of Eggerthella lenta grown in defined EDM1 media. |
| Institute | University of California, San Francisco |
| Last Name | Noecker |
| First Name | Cecilia |
| Address | 513 Parnassus Ave HSW1501, San Francisco, CA 94143 |
| cecilia.noecker@ucsf.edu | |
| Phone | 415-502-3264 |
| Submit Date | 2023-03-17 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | mzML, raw(Thermo) |
| Analysis Type Detail | LC-MS |
| Release Date | 2023-04-04 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Bacteria; Subject species: Eggerthella lenta (Factor headings shown in green)
| mb_sample_id | local_sample_id | Strain | Strain name | Condition | PlateNum |
|---|---|---|---|---|---|
| SA252743 | Ctrl_B3_1 | Ctrl | Ctrl_B3 | GL_Ctrl_B3 | 1 |
| SA252744 | Ctrl_B3_2 | Ctrl | Ctrl_B3 | GL_Ctrl_B3 | 2 |
| SA252745 | Ctrl_B3_3 | Ctrl | Ctrl_B3 | GL_Ctrl_B3 | 3 |
| SA252746 | Ctrl_D9_2 | Ctrl | Ctrl_D9 | GL_Ctrl_D9 | 2 |
| SA252747 | Ctrl_F5_1 | Ctrl | Ctrl_F5 | GL_Ctrl_F5 | 1 |
| SA252748 | Ctrl_F5_2 | Ctrl | Ctrl_F5 | GL_Ctrl_F5 | 2 |
| SA252749 | Ctrl_F5_3 | Ctrl | Ctrl_F5 | GL_Ctrl_F5 | 3 |
| SA252750 | Ctrl_G12_1 | Ctrl | Ctrl_G12 | GL_Ctrl_G12 | 1 |
| SA252751 | Ctrl_G12_2 | Ctrl | Ctrl_G12 | GL_Ctrl_G12 | 2 |
| SA252752 | Ctrl_G12_3 | Ctrl | Ctrl_G12 | GL_Ctrl_G12 | 3 |
| SA252753 | PTJ0086_1 | PTJ0086 | Eggerthella_lenta_1160AFAABroad | GL | 1 |
| SA252754 | PTJ0086_2 | PTJ0086 | Eggerthella_lenta_1160AFAABroad | GL | 2 |
| SA252755 | PTJ0086_3 | PTJ0086 | Eggerthella_lenta_1160AFAABroad | GL | 3 |
| SA252756 | PTJ0087_1 | PTJ0087 | Eggerthella_lenta_1356FAA | GL | 1 |
| SA252757 | PTJ0087_2 | PTJ0087 | Eggerthella_lenta_1356FAA | GL | 2 |
| SA252758 | PTJ0087_3 | PTJ0087 | Eggerthella_lenta_1356FAA | GL | 3 |
| SA252759 | PTJ0089_1 | PTJ0089 | Eggerthella_lenta_11C | GL | 1 |
| SA252760 | PTJ0089_3 | PTJ0089 | Eggerthella_lenta_11C | GL | 3 |
| SA252761 | PTJ0090_1 | PTJ0090 | Eggerthella_lenta_14A | GL | 1 |
| SA252762 | PTJ0090_3 | PTJ0090 | Eggerthella_lenta_14A | GL | 3 |
| SA252763 | PTJ0092_1 | PTJ0092 | Eggerthella_lenta_22C | GL | 1 |
| SA252764 | PTJ0092_2 | PTJ0092 | Eggerthella_lenta_22C | GL | 2 |
| SA252765 | PTJ0092_3 | PTJ0092 | Eggerthella_lenta_22C | GL | 3 |
| SA252766 | PTJ0093_1 | PTJ0093 | Eggerthella_lenta_28B | GL | 1 |
| SA252767 | PTJ0093_2 | PTJ0093 | Eggerthella_lenta_28B | GL | 2 |
| SA252768 | PTJ0093_3 | PTJ0093 | Eggerthella_lenta_28B | GL | 3 |
| SA252769 | PTJ0109_1 | PTJ0109 | Eggerthella_lenta_DSM11767 | GL | 1 |
| SA252770 | PTJ0109_2 | PTJ0109 | Eggerthella_lenta_DSM11767 | GL | 2 |
| SA252771 | PTJ0109_3 | PTJ0109 | Eggerthella_lenta_DSM11767 | GL | 3 |
| SA252772 | PTJ0110_1 | PTJ0110 | Eggerthella_lenta_DSM11863 | GL | 1 |
| SA252773 | PTJ0110_2 | PTJ0110 | Eggerthella_lenta_DSM11863 | GL | 2 |
| SA252774 | PTJ0110_3 | PTJ0110 | Eggerthella_lenta_DSM11863 | GL | 3 |
| SA252775 | PTJ0111_1 | PTJ0111 | Eggerthella_lenta_DSM15644 | GL | 1 |
| SA252776 | PTJ0111_2 | PTJ0111 | Eggerthella_lenta_DSM15644 | GL | 2 |
| SA252777 | PTJ0111_3 | PTJ0111 | Eggerthella_lenta_DSM15644 | GL | 3 |
| SA252778 | PTJ0112_1 | PTJ0112 | Eggerthella_sinensis_DSM16107 | GL | 1 |
| SA252779 | PTJ0112_2 | PTJ0112 | Eggerthella_sinensis_DSM16107 | GL | 2 |
| SA252780 | PTJ0112_3 | PTJ0112 | Eggerthella_sinensis_DSM16107 | GL | 3 |
| SA252781 | PTJ0166_1 | PTJ0166 | Eggerthella_lenta_UCSF2243 | GL | 1 |
| SA252782 | PTJ0166_2 | PTJ0166 | Eggerthella_lenta_UCSF2243 | GL | 2 |
| SA252783 | PTJ0166_3 | PTJ0166 | Eggerthella_lenta_UCSF2243 | GL | 3 |
| SA252784 | PTJ0169_1 | PTJ0169 | Eggerthella_lenta_Valencia | GL | 1 |
| SA252785 | PTJ0169_2 | PTJ0169 | Eggerthella_lenta_Valencia | GL | 2 |
| SA252786 | PTJ0169_3 | PTJ0169 | Eggerthella_lenta_Valencia | GL | 3 |
| SA252787 | PTJ0170_1 | PTJ0170 | Eggerthella_lenta_AN51LG | GL | 1 |
| SA252788 | PTJ0170_2 | PTJ0170 | Eggerthella_lenta_AN51LG | GL | 2 |
| SA252789 | PTJ0170_3 | PTJ0170 | Eggerthella_lenta_AN51LG | GL | 3 |
| SA252790 | PTJ0171_1 | PTJ0171 | Eggerthella_lenta_MR1n12 | GL | 1 |
| SA252791 | PTJ0171_2 | PTJ0171 | Eggerthella_lenta_MR1n12 | GL | 2 |
| SA252792 | PTJ0171_3 | PTJ0171 | Eggerthella_lenta_MR1n12 | GL | 3 |
| SA252793 | PTJ0173_2 | PTJ0173 | Eggerthella_lenta_326I6NA | GL | 2 |
| SA252794 | PTJ0173_3 | PTJ0173 | Eggerthella_lenta_326I6NA | GL | 3 |
| SA252795 | PTJ0174_1 | PTJ0174 | Eggerthella_lenta_AB8n2 | GL | 1 |
| SA252796 | PTJ0174_3 | PTJ0174 | Eggerthella_lenta_AB8n2 | GL | 3 |
| SA252797 | PTJ0175_1 | PTJ0175 | Eggerthella_lenta_AB12n2 | GL | 1 |
| SA252798 | PTJ0175_2 | PTJ0175 | Eggerthella_lenta_AB12n2 | GL | 2 |
| SA252799 | PTJ0175_3 | PTJ0175 | Eggerthella_lenta_AB12n2 | GL | 3 |
| SA252800 | PTJ0176_1 | PTJ0176 | Eggerthella_lenta_CC82BHI2 | GL | 1 |
| SA252801 | PTJ0176_2 | PTJ0176 | Eggerthella_lenta_CC82BHI2 | GL | 2 |
| SA252802 | PTJ0176_3 | PTJ0176 | Eggerthella_lenta_CC82BHI2 | GL | 3 |
| SA252803 | PTJ0177_1 | PTJ0177 | Eggerthella_lenta_RC46F | GL | 1 |
| SA252804 | PTJ0177_2 | PTJ0177 | Eggerthella_lenta_RC46F | GL | 2 |
| SA252805 | PTJ0177_3 | PTJ0177 | Eggerthella_lenta_RC46F | GL | 3 |
| SA252806 | PTJ0178_1 | PTJ0178 | Eggerthella_lenta_CC75D52 | GL | 1 |
| SA252807 | PTJ0178_2 | PTJ0178 | Eggerthella_lenta_CC75D52 | GL | 2 |
| SA252808 | PTJ0178_3 | PTJ0178 | Eggerthella_lenta_CC75D52 | GL | 3 |
| SA252809 | PTJ0179_1 | PTJ0179 | Eggerthella_lenta_CC86D54 | GL | 1 |
| SA252810 | PTJ0179_2 | PTJ0179 | Eggerthella_lenta_CC86D54 | GL | 2 |
| SA252811 | PTJ0179_3 | PTJ0179 | Eggerthella_lenta_CC86D54 | GL | 3 |
| SA252812 | PTJ0180_1 | PTJ0180 | Eggerthella_lenta_W1BHI6 | GL | 1 |
| SA252813 | PTJ0180_2 | PTJ0180 | Eggerthella_lenta_W1BHI6 | GL | 2 |
| SA252814 | PTJ0180_3 | PTJ0180 | Eggerthella_lenta_W1BHI6 | GL | 3 |
| SA252815 | PTJ0237_1 | PTJ0237 | Eggerthella_lenta_A2 | GL | 1 |
| SA252816 | PTJ0237_2 | PTJ0237 | Eggerthella_lenta_A2 | GL | 2 |
| SA252817 | PTJ0237_3 | PTJ0237 | Eggerthella_lenta_A2 | GL | 3 |
| SA252818 | PTJ0240_1 | PTJ0240 | Eggerthella_lenta_ATCC25559 | GL | 1 |
| SA252819 | PTJ0240_2 | PTJ0240 | Eggerthella_lenta_ATCC25559 | GL | 2 |
| SA252820 | PTJ0240_3 | PTJ0240 | Eggerthella_lenta_ATCC25559 | GL | 3 |
| SA252821 | PTJ0261_1 | PTJ0261 | Eggerthella_lenta_DSM2243D | GL | 1 |
| SA252822 | PTJ0261_2 | PTJ0261 | Eggerthella_lenta_DSM2243D | GL | 2 |
| SA252823 | PTJ0261_3 | PTJ0261 | Eggerthella_lenta_DSM2243D | GL | 3 |
| SA252824 | PTJ0289_1 | PTJ0289 | Eggerthella_lenta_ELUC2 | GL | 1 |
| SA252825 | PTJ0289_2 | PTJ0289 | Eggerthella_lenta_ELUC2 | GL | 2 |
| SA252826 | PTJ0289_3 | PTJ0289 | Eggerthella_lenta_ELUC2 | GL | 3 |
| SA252827 | PTJ0290_1 | PTJ0290 | Eggerthella_lenta_ELUC5 | GL | 1 |
| SA252828 | PTJ0290_2 | PTJ0290 | Eggerthella_lenta_ELUC5 | GL | 2 |
| SA252829 | PTJ0290_3 | PTJ0290 | Eggerthella_lenta_ELUC5 | GL | 3 |
| SA252830 | PTJ0295_1 | PTJ0295 | Eggerthella_lenta_RJX1627 | GL | 1 |
| SA252831 | PTJ0295_2 | PTJ0295 | Eggerthella_lenta_RJX1627 | GL | 2 |
| SA252832 | PTJ0295_3 | PTJ0295 | Eggerthella_lenta_RJX1627 | GL | 3 |
| SA252833 | PTJ0296_1 | PTJ0296 | Eggerthella_lenta_RJX1626 | GL | 1 |
| SA252834 | PTJ0296_2 | PTJ0296 | Eggerthella_lenta_RJX1626 | GL | 2 |
| SA252835 | PTJ0296_3 | PTJ0296 | Eggerthella_lenta_RJX1626 | GL | 3 |
| SA252836 | PTJ0297_1 | PTJ0297 | Eggerthella_lenta_SECOmt75m2 | GL | 1 |
| SA252837 | PTJ0297_2 | PTJ0297 | Eggerthella_lenta_SECOmt75m2 | GL | 2 |
| SA252838 | PTJ0297_3 | PTJ0297 | Eggerthella_lenta_SECOmt75m2 | GL | 3 |
| SA252687 | PTJ0181_3 | - | - | - | - |
| SA252688 | PTJ0181_2 | - | - | - | - |
| SA252689 | PTJ0174_2 | - | - | - | - |
| SA252690 | PTJ0182_1 | - | - | - | - |
