Summary of Study ST001851

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001168. The data can be accessed directly via it's Project DOI: 10.21228/M8QT2F This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

Study ID	ST001851
Study Title	Quantitative analysis of bile acids in fecal samples from centenarians, elderly and young subjects.
Study Summary	Fecal samples from centenarians (>100 yo), elderly (85-89 yo) and young (21-55) subjects were analysed using LC-MS/MS. 48 bile acids were measured by targeted metabolomics.
Institute	Keio University School of Medicine
Department	Dept of Microbiology and Immunology
Last Name	Koji
First Name	Atarashi
Address	35 Shinanomachi, Shinjuku-ku, Tokyo, JAPAN
Email	kojiatarashi@keio.jp
Phone	0353633769
Submit Date	2021-05-24
Raw Data Available	Yes
Raw Data File Type(s)	wiff
Analysis Type Detail	LC-MS
Release Date	2021-07-07
Release Version	1

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Sample Preparation:

Sampleprep ID:	SP001934
Sampleprep Summary:	Accurately weighed freeze-crushed faecal samples were resuspended in 20 times the volume of water (e.g. 12.5 mg of faece in 250 μL water). 250 μL of faecal suspension was homogenized in 747 μL of 0.27 N NaOH by ultrasonication for 1 hr in a screw-cap glass vial containing 3 μL of deuterium-labelled internal standards (d4-CA, d4-GCDCA, d4-TCDCA, d4-CDCA-3S, and d4-LCA, 50 μM each). After incubation for 1 hr at room temperature, pH was adjusted to 8.0 using 8 N HCl, mixed with 110 μL of 0.5 M EDTA/0.5 M TrisHCl. The solution was centrifuged at 15,000 rpm and the supernatant was transferred onto a solid-phase extraction cartridge (Agilent Bond Elut C18, 100 mg/3 mL, preconditioned with 1 mL of methanol and 3 mL of water, three times). The cartridge was washed with 1 mL of water and captured bile acids were eluted with 300 μL of 90% ethanol.

Sampleprep ID:

SP001934

Sampleprep Summary:

Accurately weighed freeze-crushed faecal samples were resuspended in 20 times the volume of water (e.g. 12.5 mg of faece in 250 μL water). 250 μL of faecal suspension was homogenized in 747 μL of 0.27 N NaOH by ultrasonication for 1 hr in a screw-cap glass vial containing 3 μL of deuterium-labelled internal standards (d4-CA, d4-GCDCA, d4-TCDCA, d4-CDCA-3S, and d4-LCA, 50 μM each). After incubation for 1 hr at room temperature, pH was adjusted to 8.0 using 8 N HCl, mixed with 110 μL of 0.5 M EDTA/0.5 M TrisHCl. The solution was centrifuged at 15,000 rpm and the supernatant was transferred onto a solid-phase extraction cartridge (Agilent Bond Elut C18, 100 mg/3 mL, preconditioned with 1 mL of methanol and 3 mL of water, three times). The cartridge was washed with 1 mL of water and captured bile acids were eluted with 300 μL of 90% ethanol.