Summary of Study ST001752
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001123. The data can be accessed directly via it's Project DOI: 10.21228/M8JD7N This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST001752 |
| Study Title | Dual RNA regulator VcdRP in V. cholerae modulates central metabolism |
| Study Summary | Bacterial small RNAs (sRNAs) are well-known to modulate gene expression by base-pairing with trans-coded transcripts and are typically considered to be non-coding. However, several sRNAs have been reported to also contain an open reading frame and thus are considered dual-function regulators. We discovered a dual-function regulator from Vibrio cholerae, called VcdRP, harboring a 29 amino acid protein (VcdP), as well as a base-pairing sequence. In this study, we measured the metabolite abundance of glycolytic and citric acid cycle intermediates using LC-MS. |
| Institute | Helmholtz Centre for Environmental Research |
| Department | Molecular Systems Biology |
| Laboratory | Functional Metabolomics |
| Last Name | Engelmann |
| First Name | Beatrice |
| Address | Permoserstraße 15, Leipzig, Saxony, 03418, Germany |
| beatrice.engelmann@ufz.de | |
| Phone | 00493412351099 |
| Submit Date | 2021-04-14 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | wiff |
| Analysis Type Detail | LC-MS |
| Release Date | 2021-05-01 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Bacteria; Subject species: Vibrio cholerae (Factor headings shown in green)
| mb_sample_id | local_sample_id | Condition | Strain |
|---|---|---|---|
| SA163921 | 35P | OD0.5 | delta_GltA_pCtrl |
| SA163922 | 23P | OD0.5 | delta_GltA_pCtrl |
| SA163923 | 29P | OD0.5 | delta_GltA_pCtrl |
| SA163924 | 24P | OD0.5 | delta_GltA_pVcdP |
| SA163925 | 30P | OD0.5 | delta_GltA_pVcdP |
| SA163926 | 36P | OD0.5 | delta_GltA_pVcdP |
| SA163927 | 26P | OD0.5 | delta_VcdR_pCtrl |
| SA163928 | 32P | OD0.5 | delta_VcdR_pCtrl |
| SA163929 | 20P | OD0.5 | delta_VcdR_pCtrl |
| SA163930 | 27P | OD0.5 | delta_VcdR_pVcdP |
| SA163931 | 33P | OD0.5 | delta_VcdR_pVcdP |
| SA163932 | 21P | OD0.5 | delta_VcdR_pVcdP |
| SA163933 | 22P | OD0.5 | delta_VcdR_pVcdR |
| SA163934 | 34P | OD0.5 | delta_VcdR_pVcdR |
| SA163935 | 28P | OD0.5 | delta_VcdR_pVcdR |
| SA163918 | 31P | OD0.5 | WT_pCtrl |
| SA163919 | 25P | OD0.5 | WT_pCtrl |
| SA163920 | 19P | OD0.5 | WT_pCtrl |
| SA163939 | 11P | Overnight | delta_GltA_pCtrl |
| SA163940 | 5P | Overnight | delta_GltA_pCtrl |
| SA163941 | 17P | Overnight | delta_GltA_pCtrl |
| SA163942 | 6P | Overnight | delta_GltA_pVcdP |
| SA163943 | 12P | Overnight | delta_GltA_pVcdP |
| SA163944 | 18P | Overnight | delta_GltA_pVcdP |
| SA163945 | 8P | Overnight | delta_VcdR_pCtrl |
| SA163946 | 2P | Overnight | delta_VcdR_pCtrl |
| SA163947 | 14P | Overnight | delta_VcdR_pCtrl |
| SA163948 | 15P | Overnight | delta_VcdR_pVcdP |
| SA163949 | 9P | Overnight | delta_VcdR_pVcdP |
| SA163950 | 3P | Overnight | delta_VcdR_pVcdP |
| SA163951 | 10P | Overnight | delta_VcdR_pVcdR |
| SA163952 | 16P | Overnight | delta_VcdR_pVcdR |
| SA163953 | 4P | Overnight | delta_VcdR_pVcdR |
| SA163936 | 7P | Overnight | WT_pCtrl |
| SA163937 | 13P | Overnight | WT_pCtrl |
| SA163938 | 1P | Overnight | WT_pCtrl |
| Showing results 1 to 36 of 36 |
