Summary of Study ST001775
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001129. The data can be accessed directly via it's Project DOI: 10.21228/M8RX1D This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
Study ID | ST001775 |
Study Title | Plasma metabolomics of diverse mouse strains infected with Plasmodium chabaudi |
Study Summary | To uncover links between metabolism and disease severity in murine malaria, we performed plasma metabolomics via Metabolon on eight inbred, Plasmodium chabaudi-infected mouse strains with diverse disease phenotypes. We sacrificed and collected plasma from >=3 mice per strain per day of acute infection alongside uninfected control mice (approximately days 5-12 depending on mouse strain). We collected disease severity data, e.g. weight loss, liver enzymes, and anemia, concurrently. Together, these data enable 1) a picture of strain-specific and conserved metabolic responses during acute malaria, and 2) a comparison between metabolic responses and disease severity. |
Institute | Stanford University |
Department | Microbiology & Immunology |
Laboratory | David Schneider |
Last Name | Schneider |
First Name | David |
Address | 299 Campus Drive, Stanford, CA 94305 |
dschneid@stanford.edu | |
Phone | 650-724-8064 |
Submit Date | 2021-04-11 |
Num Groups | 8 mouse strains +/- Plasmodium infection |
Total Subjects | 369 |
Num Females | 369 |
Analysis Type Detail | LC-MS |
Release Date | 2021-05-21 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Mammal; Subject species: Mus musculus (Factor headings shown in green)
mb_sample_id | local_sample_id | Strain | SacDay | Infected_yn |
---|---|---|---|---|
SA164573 | StrainsMetabs_129_1_34 | 129S1/SvImJ | 10 | TRUE |
SA164574 | StrainsMetabs_129_1_32 | 129S1/SvImJ | 10 | TRUE |
SA164575 | StrainsMetabs_129_1_33 | 129S1/SvImJ | 10 | TRUE |
SA164576 | StrainsMetabs_129_1_31 | 129S1/SvImJ | 10 | TRUE |
SA164577 | StrainsMetabs_129_1_30 | 129S1/SvImJ | 10 | TRUE |
SA164578 | StrainsMetabs_129_2_B6_2_30 | 129S1/SvImJ | 11 | FALSE |
SA164579 | StrainsMetabs_129_2_B6_2_31 | 129S1/SvImJ | 11 | FALSE |
SA164580 | StrainsMetabs_129_2_B6_2_20 | 129S1/SvImJ | 11 | TRUE |
SA164581 | StrainsMetabs_129_2_B6_2_18 | 129S1/SvImJ | 11 | TRUE |
SA164582 | StrainsMetabs_129_2_B6_2_16 | 129S1/SvImJ | 11 | TRUE |
SA164583 | StrainsMetabs_129_2_B6_2_17 | 129S1/SvImJ | 11 | TRUE |
SA164584 | StrainsMetabs_129_2_B6_2_19 | 129S1/SvImJ | 11 | TRUE |
SA164585 | StrainsMetabs_129_2_B6_2_25 | 129S1/SvImJ | 12 | TRUE |
SA164586 | StrainsMetabs_129_2_B6_2_21 | 129S1/SvImJ | 12 | TRUE |
SA164587 | StrainsMetabs_129_2_B6_2_22 | 129S1/SvImJ | 12 | TRUE |
SA164588 | StrainsMetabs_129_2_B6_2_24 | 129S1/SvImJ | 12 | TRUE |
SA164589 | StrainsMetabs_129_2_B6_2_23 | 129S1/SvImJ | 12 | TRUE |
SA164590 | StrainsMetabs_129_2_B6_2_2 | 129S1/SvImJ | 3 | TRUE |
SA164591 | StrainsMetabs_129_2_B6_2_27 | 129S1/SvImJ | 3 | TRUE |
SA164592 | StrainsMetabs_129_2_B6_2_1 | 129S1/SvImJ | 3 | TRUE |
SA164593 | StrainsMetabs_129_2_B6_2_7 | 129S1/SvImJ | 4 | TRUE |
SA164594 | StrainsMetabs_129_2_B6_2_8 | 129S1/SvImJ | 4 | TRUE |
SA164595 | StrainsMetabs_129_2_B6_2_6 | 129S1/SvImJ | 4 | TRUE |
SA164596 | StrainsMetabs_129_2_B6_2_13 | 129S1/SvImJ | 5 | TRUE |
SA164597 | StrainsMetabs_129_2_B6_2_11 | 129S1/SvImJ | 5 | TRUE |
SA164598 | StrainsMetabs_129_2_B6_2_12 | 129S1/SvImJ | 5 | TRUE |
SA164599 | StrainsMetabs_129_1_10 | 129S1/SvImJ | 6 | TRUE |
SA164600 | StrainsMetabs_129_1_9 | 129S1/SvImJ | 6 | TRUE |
SA164601 | StrainsMetabs_129_1_6 | 129S1/SvImJ | 6 | TRUE |
SA164602 | StrainsMetabs_129_1_7 | 129S1/SvImJ | 6 | TRUE |
SA164603 | StrainsMetabs_129_1_8 | 129S1/SvImJ | 6 | TRUE |
SA164604 | StrainsMetabs_129_1_17 | 129S1/SvImJ | 7 | FALSE |
SA164605 | StrainsMetabs_129_1_16 | 129S1/SvImJ | 7 | FALSE |
SA164606 | StrainsMetabs_129_1_12 | 129S1/SvImJ | 7 | TRUE |
SA164607 | StrainsMetabs_129_1_15 | 129S1/SvImJ | 7 | TRUE |
SA164608 | StrainsMetabs_129_1_14 | 129S1/SvImJ | 7 | TRUE |
SA164609 | StrainsMetabs_129_1_11 | 129S1/SvImJ | 7 | TRUE |
SA164610 | StrainsMetabs_129_1_13 | 129S1/SvImJ | 7 | TRUE |
SA164611 | StrainsMetabs_129_1_19 | 129S1/SvImJ | 8 | TRUE |
SA164612 | StrainsMetabs_129_1_21 | 129S1/SvImJ | 8 | TRUE |
SA164613 | StrainsMetabs_129_1_22 | 129S1/SvImJ | 8 | TRUE |
SA164614 | StrainsMetabs_129_1_20 | 129S1/SvImJ | 8 | TRUE |
SA164615 | StrainsMetabs_129_1_18 | 129S1/SvImJ | 8 | TRUE |
SA164616 | StrainsMetabs_129_1_28 | 129S1/SvImJ | 9 | FALSE |
SA164617 | StrainsMetabs_129_1_29 | 129S1/SvImJ | 9 | FALSE |
SA164618 | StrainsMetabs_129_1_25 | 129S1/SvImJ | 9 | TRUE |
SA164619 | StrainsMetabs_129_1_24 | 129S1/SvImJ | 9 | TRUE |
SA164620 | StrainsMetabs_129_1_26 | 129S1/SvImJ | 9 | TRUE |
SA164621 | StrainsMetabs_129_1_23 | 129S1/SvImJ | 9 | TRUE |
SA164622 | StrainsMetabs_129_1_27 | 129S1/SvImJ | 9 | TRUE |
SA164623 | StrainsMetabs_AJ_49 | A/J | 10 | TRUE |
SA164624 | StrainsMetabs_AJ_48 | A/J | 10 | TRUE |
SA164625 | StrainsMetabs_AJ_9 | A/J | 3 | FALSE |
SA164626 | StrainsMetabs_AJ_8 | A/J | 3 | FALSE |
SA164627 | StrainsMetabs_AJ_4 | A/J | 3 | TRUE |
SA164628 | StrainsMetabs_AJ_5 | A/J | 3 | TRUE |
SA164629 | StrainsMetabs_AJ_6 | A/J | 3 | TRUE |
SA164630 | StrainsMetabs_AJ_10 | A/J | 4 | TRUE |
SA164631 | StrainsMetabs_AJ_13 | A/J | 4 | TRUE |
SA164632 | StrainsMetabs_AJ_14 | A/J | 4 | TRUE |
SA164633 | StrainsMetabs_AJ_21 | A/J | 5 | FALSE |
SA164634 | StrainsMetabs_AJ_20 | A/J | 5 | FALSE |
SA164635 | StrainsMetabs_AJ_15 | A/J | 5 | TRUE |
SA164636 | StrainsMetabs_AJ_16 | A/J | 5 | TRUE |
SA164637 | StrainsMetabs_AJ_17 | A/J | 5 | TRUE |
SA164638 | StrainsMetabs_AJ_24 | A/J | 6 | TRUE |
SA164639 | StrainsMetabs_AJ_25 | A/J | 6 | TRUE |
SA164640 | StrainsMetabs_AJ_26 | A/J | 6 | TRUE |
SA164641 | StrainsMetabs_AJ_22 | A/J | 6 | TRUE |
SA164642 | StrainsMetabs_AJ_23 | A/J | 6 | TRUE |
SA164643 | StrainsMetabs_AJ_32 | A/J | 7 | FALSE |
SA164644 | StrainsMetabs_AJ_33 | A/J | 7 | FALSE |
SA164645 | StrainsMetabs_AJ_29 | A/J | 7 | TRUE |
SA164646 | StrainsMetabs_AJ_28 | A/J | 7 | TRUE |
SA164647 | StrainsMetabs_AJ_31 | A/J | 7 | TRUE |
SA164648 | StrainsMetabs_AJ_27 | A/J | 7 | TRUE |
SA164649 | StrainsMetabs_AJ_30 | A/J | 7 | TRUE |
SA164650 | StrainsMetabs_AJ_37 | A/J | 8 | TRUE |
SA164651 | StrainsMetabs_AJ_39 | A/J | 8 | TRUE |
SA164652 | StrainsMetabs_AJ_35 | A/J | 8 | TRUE |
SA164653 | StrainsMetabs_AJ_38 | A/J | 8 | TRUE |
SA164654 | StrainsMetabs_AJ_34 | A/J | 8 | TRUE |
SA164655 | StrainsMetabs_AJ_45 | A/J | 9 | FALSE |
SA164656 | StrainsMetabs_AJ_44 | A/J | 9 | FALSE |
SA164657 | StrainsMetabs_AJ_46 | A/J | 9 | TRUE |
SA164658 | StrainsMetabs_AJ_40 | A/J | 9 | TRUE |
SA164659 | StrainsMetabs_AJ_42 | A/J | 9 | TRUE |
SA164660 | StrainsMetabs_AJ_41 | A/J | 9 | TRUE |
SA164661 | StrainsMetabs_AJ_43 | A/J | 9 | TRUE |
SA164662 | StrainsMetabs_129_2_B6_2_47 | C57BL/6 | 10 | TRUE |
SA164663 | StrainsMetabs_129_2_B6_2_50 | C57BL/6 | 10 | TRUE |
SA164664 | StrainsMetabs_129_2_B6_2_48 | C57BL/6 | 10 | TRUE |
SA164665 | StrainsMetabs_129_2_B6_2_46 | C57BL/6 | 10 | TRUE |
SA164666 | StrainsMetabs_129_2_B6_2_49 | C57BL/6 | 10 | TRUE |
SA164667 | StrainsMetabs_129_2_B6_2_70 | C57BL/6 | 11 | FALSE |
SA164668 | StrainsMetabs_129_2_B6_2_69 | C57BL/6 | 11 | FALSE |
SA164669 | StrainsMetabs_129_2_B6_2_52 | C57BL/6 | 11 | TRUE |
SA164670 | StrainsMetabs_129_2_B6_2_51 | C57BL/6 | 11 | TRUE |
SA164671 | StrainsMetabs_129_2_B6_2_55 | C57BL/6 | 11 | TRUE |
SA164672 | StrainsMetabs_129_2_B6_2_53 | C57BL/6 | 11 | TRUE |